G29541


Basic Information

Item Value
gene id G29541
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18614357 ~ 18614724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34829
AGCACTTTAAGATTTTAACTTGACAGGTTCACCTGTTTTTTCAGCAAACAGTGATAATACCtgtacatgcacatacatatgTGCATGCACACAGATGAATCAAAAACCCTCAAGATTAAAATAATGGCACATATGAAAGTtgccatattattattattattattattattattattgcatttaaatattcactTGCATTTAGCTTCATTTGAAATATATAATGATCTGCAGACAAACTATTACATGTAATGTAGCATGAGCctgattaaatcattaaattctCTTGTCATGGCTAAGTGTCATAAAATGGcccttaaatttaatttaacttaaatataatttaattttaatttaattcacatTTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34829 True 368 lncRNA 0.27 1 18614357 18614724

Neighbor

gene id symbol gene type direction distance location
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding downstream 28131 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding downstream 37062 18577224 ~ 18577295 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding downstream 149786 18449257 ~ 18464571 (-)
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding downstream 487445 18116405 ~ 18126912 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding downstream 508078 18094167 ~ 18106279 (-)
LOC113534471 LOC108271530,LOC108427638 coding upstream 1253 18615977 ~ 18623608 (-)
sox14 sox14,LOC103365676,LOC100695210 coding upstream 73874 18688598 ~ 18691082 (-)
hdlbpa hdlbp coding upstream 205333 18820057 ~ 18835789 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding upstream 301901 18916625 ~ 18927201 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding upstream 343049 18957773 ~ 18961671 (-)
G29439 NA non-coding downstream 161381 18452468 ~ 18452976 (-)
G29237 NA non-coding downstream 771537 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 899992 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 976340 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 1102902 17487361 ~ 17511455 (-)
G29542 NA non-coding upstream 145 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 19354 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 269260 18883984 ~ 18887011 (-)
G29614 farp2 non-coding upstream 275993 18890717 ~ 18895805 (-)
G29678 NA non-coding upstream 369338 18984062 ~ 19049735 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 418729 18148228 ~ 18195628 (-)
G29279 NA other downstream 541448 18070987 ~ 18072909 (-)
G29263 NA other downstream 664639 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 1085042 17472330 ~ 17529315 (-)
G29158 NA other downstream 1334184 17272955 ~ 17280173 (-)
LOC113537624 NA other upstream 179301 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 201535 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 202403 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1388635 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1744998 20359722 ~ 20429325 (-)

Expression


Co-expression Network