G29612


Basic Information

Item Value
gene id G29612
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18883984 ~ 18887011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34947
AGAAACTGAAGTTTATAACCACTATCCATATAGCTGTTTTTCCTGGATGATGGATTCCTGCTCTTACACTATGAAGATCTTCAAGAGTAAAtcaaacatgcaaaaatattttctccATATTTAACAGAGTAAATAATGCTGCTTTCAAGTCCTTCTCAGAAGTTCAAACTTTAGGAGCGTTAGTCATAAGTAAGGCATGACATGCAGAGAGAGGATGTTTTGCATTAGTGAAAGGAAATGAATAACAAAGGGTGCACATTAGCTGAGTAGTGCTTTCATTTAGTTAACAGTGTTGGATCATATTGTACATGCTCCAGGTTTTCCTATGTGGAGGCATGTAAGcccttaaaaaaacatttttagtctGTAAGTGTTTGTGTCGCTGCTGAGCAACAGTAATACAAGTAGCTTACTGTCTATagctgtgcttttttaaaatctctgtgGACGCAACGTCTGTATTGGCAGCAGCCatgatttttgtaaaaatgagtTTCAGACTAGTAATTACAACATTGTGGTGGCTCTCATcacataattattatatttccgGCAGGCCCTGGCAAGGCAGGCATGTGTGATGTACACCCACGAAATAAATTTTACCCCCAGTCCCAGTATCTTAAAGGAAACCAAAACACCAAAACTAATATCATTTTTGTCTATTACTATAACGTCTCTAGCACTGTTCCTGCTGCAGATAACACACATCATATAGCAAAGATGAGCCACTCTAGTCTACTCTATTCTTTTCTAGAAAGTTAAACAGTGCTTACAATATCAGCAAAACAATCCACTAATcacaacacaaaacagcagCCAGTTGAACGCAAGTATGAGCATACGTCAGGGTATAAAGTCAGTCCTAAACTATACACTGAAAGTAGTTGGTCTAAAATTACTGCAGTGTAGAATTTCGCTTGCTGCGCAGACACCTAAGGTACATCACAACTAGTAGCgatcaaatgattaaaaactttTGTCAGACAGAATGAGATATTTGATCATCACATGCCGAACAGAAACAGGACGaaacaaacaggaaatactaCATTCTGGGAAGCAGGTAGCGtctgttttatttacttcaaaCAAGGTCCATCTCTCAAGttagtcattttaaaaatgtcattttcttaATGCTATTTTCTTAACAaaccactgcaaaaaaaattaatggagCAGCTGCAAGCTTAATCTGCATTTGAAGACACTGAATGATGAAATAAAGTACAACATTAACACAgcagtaaaatgttttgtaatgtaTCTTTCTAATAATCTCAGTTTGACCAGTCTGACACTTTGTGCTACCACTTCAATGCTTGTTACACTGCCTGCCAGAAAAATAGCCTATTTGTAGTTCATCCCATCATCCCTTATGTTTATATTTGCCACTACAGTGCATATCAGTGAGGCGGTCATGTCCAGCACAGGTAACAAAAATACTTTCAAAGTAAAAAACCATTAAACTcccaacaaaataataataataaaaatgtatttgtatagtCATATAGTCATAAATGTACTCTTTACTCTGCACACTTTGAACAGAATTACTGAATAGTTGCGGAAAGGCAGAACACTCCCTTAAAAATTTACATCAAAAAGTATACCTACTGTAGGGGTGTAATGAAATGCCACtatgtgtatctgtatttatttagtgctcaaatatacatataaatttccttattcagatttaaactggAATGTGTGTACGGTCTAACCAGAAAGGTTTTTTACTACTATGCCCTggaaacacagaaataaacaggctgctattataacaaatatacattatattaatatatatattaaatatattataatatatcaTAACAAATggcaatttgcagaacattctgtttttttcaactcctgaaccagaTTCCATGTGGAGCTTTCTGTCTTCTATCTAATGGAACTGAGTAAGCAAACAACAATGCCTTTCCAAAATCAGGGAACTGTTGTTTATAGTTGACAACAGctatctaataatattttatgagAATTTCTTCAGTTTTGCAGAAGGTTtgtaacatttcaaaaaagCCAGAAAAGTTTGCTGGACACTCCATCAGAATCTACCACAAAGTTGGCGTGAGCCAAACTGGGGTCCTTTAAACTACATTCCATTATAATGACTGTATGATGTTCTGAGAAGATTTTCGTTTAATAATGTTGGAGGATGTTCATTATTTAGGTCAGGCTACTGGAGCAAACCactaaggaaaaaaatgaatagtgcaaCTCCTATTAGTATTATGTTAATTAACTTGGACACTGGTCCCCAACCAGGGTTGCCAAGTTCTGCATGTACCATCCATGTATTGCAGATACGGCAAATTAGTGATGTGTTACCTTATCCTCCACACTaatactgagaaaaagaagaaatttgtGTCCACCTTTTCATAAGTCTGAATATTTCAGgctagatataaataaatacatataaaacaaGTGCTGGTGGTTTGGTAGGATGAGTCTAGTTTGAGACATGTTCATGGTGTTTGCTACTTATAGTGCATTGACAAATTATTGCTGTCACATGTACCACTATttaccaaaacacacactgaaagaagAATACAGGAAACCACTTTCCCCGGTTAAATGAAGAACAAACTGAATGTTACTGAGGGTCTAATGCATTAAAGCTAttctgacaaaaaaatatataagatttTCAAAATATATGCAAAACTACGGTGGGACACAAGCTTGAGTGTGATATGTACAAGGAAATACAAAACCTGAAACCACAGGTGttcagtaaaagtaaaatacacAGGACTAGTATTATTTGCATGATGTTATGCACTGTTTCTATGGTCACTATGTGCAGTGAGGACAAGGATGGTAATGGTCTTACACATGTCTGCGATGGATCTCCATGATCTTCTCCTGCAACTGCTCCTGGTGCGGCAGCAGCTTAGTGAGCTTCAGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34947 True 2958 lncRNA 0.47 2 18883984 18887011

Neighbor

gene id symbol gene type direction distance location
hdlbpa hdlbp coding downstream 48195 18820057 ~ 18835789 (-)
sox14 sox14,LOC103365676,LOC100695210 coding downstream 192902 18688598 ~ 18691082 (-)
LOC113534471 LOC108271530,LOC108427638 coding downstream 260376 18615977 ~ 18623608 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding downstream 297758 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding downstream 306689 18577224 ~ 18577295 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding upstream 29614 18916625 ~ 18927201 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding upstream 70762 18957773 ~ 18961671 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding upstream 77280 18964291 ~ 18969451 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding upstream 83297 18970308 ~ 18976937 (-)
im:7152348 NA coding upstream 485419 19372430 ~ 19376164 (-)
G29551 NA non-coding downstream 249627 18634078 ~ 18634357 (-)
G29542 NA non-coding downstream 268110 18614869 ~ 18615874 (-)
G29541 NA non-coding downstream 269260 18614357 ~ 18614724 (-)
G29439 NA non-coding downstream 431008 18452468 ~ 18452976 (-)
G29237 NA non-coding downstream 1041164 17784475 ~ 17842820 (-)
G29614 farp2 non-coding upstream 3706 18890717 ~ 18895805 (-)
G29678 NA non-coding upstream 97051 18984062 ~ 19049735 (-)
G29793 NA non-coding upstream 371939 19258950 ~ 19259178 (-)
LOC117596148 NA non-coding upstream 496303 19383314 ~ 19385251 (-)
trnap-cgg_1 NA non-coding upstream 499431 19386442 ~ 19386513 (-)
trnap-ugg NA other downstream 66786 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 67172 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 67654 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 688356 18148228 ~ 18195628 (-)
G29279 NA other downstream 811075 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 1116348 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1472711 20359722 ~ 20429325 (-)
lepr lepr other upstream 2394353 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 2562535 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3685421 22572432 ~ 22581943 (-)

Expression


Co-expression Network