G29614 (farp2)


Basic Information

Item Value
gene id G29614
gene name farp2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18890717 ~ 18895805 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34949
ttacactttttcacattaATTGTTATAGATTAGGCACTTAGGTTTTTTGGTGATTCTGAAATTAAGAGCTTTTAAGTGAAATTAAGTGGTCTTTTTTCTAAAATGATACCAatcattaatttaataaaatcaaGAGAGGAAGATGGAAGGGGGGAAAAGAACAGGAAGATAATACTCAGAGCAAGGATGATCTTGCCTGTGTGTCTTCACAAACTGTTAAGTTCTGCAAAGATTTGTGTAGTGTTAATTTCtagtttttatatttgtagTTAATGGACATAATTGATAGAATGAATAAAGACAGTACACAAAACATGGGCATTATTACAGGTTGGAAAGTTTCCATCTGTGGTCAGTGAGCACAATGGGTTAGTCATAGTGGTCAAGACTCAACCTAGTTCAGATTAATCAGCAAATGGTTCGAGTCTGTGTTAACTATGACAGTGTTCCATATTTGTCTATACAATTTGATATGACTTTATCATATTAATAGTTTTTAAGTGCTTGCTAAACTGCTTTCTGATAATTACTAAACCTTCAATGGGCTACTGCAAGACTCAATAAGAAAAGCAGCACTTTGTGACCACCTTGCTTTGATCTTACCATCCAGACATGTGTGAGAGAAAGCTGCAGGGTTACTGCAAAGCTCAGGGTGAGTAATGTGTCTATGTGAAGAGCAGACGCCCAGCCTTCATAAACAAACCTTTGACCATCTTGGGTAAATCTTCTGCTGCCGCTACAGCTTCAAAGCAGCATTAAAACCCAAACAGATGTTTATCGTTATAAAAGCTAGCCAGAGCACATCGGGTTATGAAGTAAAACTGCATTAATGCATTAAGAATTTAAGgtcaattaaacaaacaaaatagcTTGAGTCTATGGACGTGTCCAAAACATAGTTGTGCATTTTTCAGATCATTTCCAAAAACAGAATTTCAGCATGCCTCAAACTCATCTAATGCCACATTGACAAAGGTCCAAGCTTGTCCAAGGATGGAGGTAAGGCAGCTGGATGGCTATTCTGGGCCCAGTTACACTGCTCGTCCTCGCTTGTGAGAGTAGAGAGGTTTTAGGAGGAAACAACTGCACGCATTTGGTGCTGAACACAGCTTTGCCGGCTCTCAAAATGACAATGAGAATGAACTCGCCCTTAAATTACCTAACAACTGGTAATCCACAGTCACATGGGATTTCACTCCAGCTTACGCAAAGGTTTTCTTCATCTGTAGGTTCAAGTCTTTTTATAGTTCTTTTGAATTCATCTCTGTGCCATTTAGTGTATTTTGTACTGAGGTAACGGCTAGTTTACAAAACCACAGCTGAAAAGGGCTAGAAAAGATTGTCAGAGGAACACAAACCGAAAATCTGACAACTGAATTTAGTAGAATGTGGACTgagaagaaacaaagagagcCTGGGCGATTCGGCAAAGTGAAGCAGGATGAGATGAAGCAGGAAATGGAATTAAATGGAATTTCACAGGAGACAGAATAAGTAAATGACATCACCCAAAGGAAAAACTGCACTGACCATGCCCCATCTTGTGGTTTAGATCTCAATGTACTTATGGAACGCACCTCAGCCAAGAAACAAAGGCATTTAAGCAGTCTGGTCCACCCACAAAACCGCATCTGCACCCGACTGATGTTTCCTGTTACAGTCCTGTGTAATGTCCAGTACTGTAATGTCAGCTTTGATCAATCCAGTGGGTTTGTCTAAAGCAAAACCTATTTCATTAACTAAATGCAactatttaagaaaataatgatgCAATAAGTGAACACTGGATGCATGTGAGGGAACTCAAAAACAAAGCAAGATAGGATAATTTGCTATATAGTTCAGTCAAAAAGATTCGGAAAGCCtacattttatcataaacagTACCCAAATCTGTGGTGCCATGGAATTAATGCACTTTCAATCAGTAAGGTCACACAAATCTTATAAACCATATAAATCTTTTGAAGCTTAGTACAGCAAGGAGGATGAAGCACATTCTTCATTAAATGTATCTCTGTAGTGTAAAAATAACTGAAGTAAATcaaatacatatatagatatatcCAAGCGTATAGGGGAGAGTTAATACCAAGTCCCATCTAAGGGGACACAAACGCTCCCTTCACTGAAAAATGCAGGAATGTGCTTTCAAACTACAATTTTTTTGTGCCAAGAACATTTAGGAATCTCTGACACTATGCATTAGCTTGCATATCATTCAAGGAGCAGGTTACATTCACACtgttggcttttttttgttgGCAGCACTCTGGTGCATTACATTCCCTggagtaaagaataaaaaaaaattcattaaatctaagatacttaaaaaaaaaggtttgccTGGAAATGATACTGTGCAGTAAAGAAAGTCAAGCTacatagaaataaaacaccatcACCACAGATAATCATCAATAAGGCAGATAATCCAGAAATAATCATAAAAAGTGTGGCATGGGAAAATACTGAACAGCAGGGGACACTGTGGAGTAAAATTGATCATGAAATTACCAATACCAATGCGATTAAGCCTCAACCAAACTTTGGTTCAAGGACTTTAACTTTGTTTTTGAAGAGGCACTGCTGTCAGTTTCACTGCTGATTCACAACAGCCCTAAGCAGAGTGCCATAACACTCAAATTCACACTAAACACTGGGGAGTGGATACGTAAATGGTCAGACATTTTTGGTATACAAAGTACGTGGCGTCTGACTTTAAAATATCCATTCTGAGTATGGCTGTGTTGCAATTCATGTTTTCTCTTTAAACTTGTGATAGACTGTATTTAGGGAACTTTTATTCCCTTTTTTGAGAGTGACTGAAGATGcacctgtttttttaaaaaattttttactaatttaactGACtaatttgatcatttatttaaaatattatttgttttcaaatatgttatttttgtctcttttgtttAATTGTAAAAAGATCAGTGtcagattattatataaaagaCAACACAATACCACACCGAGCAAACaaaatatcagcacatgccttACTGGCAGCATGCGGTTGCTCCTTAGCTGGAATCTTTATACCAGCATTTAAGACAAGTATtgtctgtgtaaactctgtggTAATATTTGACTATTTAGAAAAACAGCTTAGGTCAGTAAACTCTAGATTGATAAATGGGTTCATGTTTCACAGTTCACTAAAAATATAAACTGGaattgcattaaaatattcAGCAAATAACAGAGATTGCTGTATTTTTAGACTGAAATAATACATTCTGGTGCTGAATAAAGCAACAACAATAGCATAGTCTTCAATATTATAGAAGAATTTCTAATGCAGTGATTCTCAAACCAGTACTCAGATTTGAGAGCCACTATTCTACACTACAGACTATTTCAATATTCTCCTTCAAAGTCCAACACTGGCTTTAAATAACTGTGGTGGTCAATAATTTTTCAACAATCTGTGCGATTGGCACTATAGACCAGCCCAAACATCAAGTTTAAAGCAGATTCAAAACATAAGGCATAGAAAAGAGTACAGAGCAGCAAACAGGAGAGCTGAACCTGCACTTCAGCTTGGAGGAAAAATCTCTAATGTCAGCATCAAATCATACAAGAGTGATTGTAGAACCAGAAGGCATGTCATGACAAGACGCAAGCTTGAACAACATAGCAAACATTTAGAAAATCTGGACACACCAGAAAGCAAGAAAGACTAGCGGCTAAGTGTGCTATAAGATAAGGTTTGAAGGAAAAAGTGGCAGCATGAGATGCTAAAGGTTTCTATTACGTTCTCAATAATTACGTAGTGGGGAAAAAGACGGCGACATGCTCCACCTGGCACCAAGCCAGTGTGTCTTTTTCAATTCTAAAGTATTATAAAAGTGGGTATATTGTGAACAAAAAGCCTGACATACAGGCATGGATGGAGCTTTAGTGGTCCACAAGGCACTTCTCTCTAGAATATTATAGTAGAGAGCCAGATTTAGCGAAAagtaaatacactaaatatCAAGTTGGGTGGATTTGGGGGGTTCCCCAAGGCTTAATGCACGAAGGTTGTGGCACTCAAGGAGGAAAGCTTCCATGTCTGCGGTACCAGTAAATGGGTTGCTGTAAAACAGGCTCTGATCTGACATCAGGCCTCCATCCGAGCCCCAGTCTGAGTCTGAATCGGAGCTGCCATCCCCTGAGCCCTCTGTGCCTGTCGGCGGGCAGCTAAGCTGCTCCAGCTGGTCCACCAGCTCACTAAACTGCATGGCCGAGCTGGCCTCTGAACGAGCAGAGCATGGTGGGAAATTGAGCATGGAGCTGGCCTCAGATAGGTCTTCTGAGCCGGGCAAGCGCAGAGATGAGGACGACAGTCCCAGGTTGTCCAGAGAGCTGCACTCTGAGCGGTTATTGACCAGAGAGCTGGTCTCAGAGCGACCAAAGGCACCCTCTGAAAACGCATTTGAGTTTCCATTCATTTCACATTCGCCATATTTGAACGTCTCACCATTTTCATTAAAGCCGAACATGTACGCTTCAGTTCCGCCTgcataaaaagacatttcaGCAGGGTCATCATCTATGAACTCCTCACTGAACTGCAGCGGGAATGCAGGGATTGGCCCTGTGCGCATAAACTCTACCTCCAAAGCCTCCAAAGGAGTAAGGAAGGACTTCCCGGCACCTGAACCAAGGCTATGCATCTGACCTCGCCCACCCTCACCCAAAGCCATGTGATCGCCATAATCATTGCCATTTTGGGAGAAGCTACTCTCTACACACACGAACGAGGGGCTGCAGTCTCCTGCTGCCGGGTTGTAAGGGGCACCTGGGAAGGCTGAGTTAGATGGAGGGTGGATCTTTGCAGGCTCCTCCTTCACAGGGGTAGGTGGTCTCACAGGCTGCTGGAGAgatgggatgtgctggatctGCTGGATTTGAGGTTTGCTATTGTTATCCAGTCGTACAGGAGAGATGGATGAGTGCAGAGAGTGGAAGGAAACAGTGGCAGATGGGGGAGAACTGCAAATCTTAAGGCTGTCGTTGAAGGACAG

Function

symbol description
farp2 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoskeleton. Orthologous to human FARP2 (FERM, ARH/RhoGEF and pleckstrin domain protein 2).

NR:

description
PREDICTED: FERM, RhoGEF and pleckstrin domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34949 True 5036 lncRNA 0.40 2 18890717 18895805

Neighbor

gene id symbol gene type direction distance location
hdlbpa hdlbp coding downstream 54928 18820057 ~ 18835789 (-)
sox14 sox14,LOC103365676,LOC100695210 coding downstream 199635 18688598 ~ 18691082 (-)
LOC113534471 LOC108271530,LOC108427638 coding downstream 267109 18615977 ~ 18623608 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding downstream 304491 18501538 ~ 18586226 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding upstream 20820 18916625 ~ 18927201 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding upstream 61968 18957773 ~ 18961671 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding upstream 68486 18964291 ~ 18969451 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding upstream 74503 18970308 ~ 18976937 (-)
im:7152348 NA coding upstream 476625 19372430 ~ 19376164 (-)
G29612 NA non-coding downstream 3706 18883984 ~ 18887011 (-)
G29551 NA non-coding downstream 256360 18634078 ~ 18634357 (-)
G29542 NA non-coding downstream 274843 18614869 ~ 18615874 (-)
G29541 NA non-coding downstream 275993 18614357 ~ 18614724 (-)
G29439 NA non-coding downstream 437741 18452468 ~ 18452976 (-)
G29678 NA non-coding upstream 88257 18984062 ~ 19049735 (-)
G29793 NA non-coding upstream 363145 19258950 ~ 19259178 (-)
LOC117596148 NA non-coding upstream 487509 19383314 ~ 19385251 (-)
trnap-cgg_1 NA non-coding upstream 490637 19386442 ~ 19386513 (-)
G29905 NA non-coding upstream 508603 19404408 ~ 19404621 (-)
trnap-ugg NA other downstream 73519 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 73905 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 74387 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 695089 18148228 ~ 18195628 (-)
G29279 NA other downstream 817808 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 1107554 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1463917 20359722 ~ 20429325 (-)
lepr lepr other upstream 2385559 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 2553741 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3676627 22572432 ~ 22581943 (-)

Expression


Co-expression Network