G29641


Basic Information

Item Value
gene id G29641
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19050824 ~ 19051043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34993
acaccccttcatggcagcggtattccctaatggcagtggcctctttcagcaggataatgcgccctgccacactgcaaaaattgttcaggaatggtttgaggaacacgacaaggagttcaaggtgttgacttggcctccaaattccccagctctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatctatggaggccccacctcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34993 True 220 lncRNA 0.48 1 19050824 19051043

Neighbor

gene id symbol gene type direction distance location
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding upstream 1074 18988003 ~ 19049750 (+)
atg4b atg4b coding upstream 93044 18951689 ~ 18957780 (+)
farp2 farp2 coding upstream 133818 18858439 ~ 18917006 (+)
LOC113527312 NA coding upstream 193662 18841437 ~ 18857162 (+)
dzip1l LOC108271535 coding upstream 435999 18600959 ~ 18614825 (+)
scly scly coding downstream 1079 19052122 ~ 19060672 (+)
klhl30 klhl30,LOC107696751,LOC107753621,LOC107752665,LOC107694118 coding downstream 38841 19089884 ~ 19096027 (+)
crocc2 LOC108272137 coding downstream 46694 19097737 ~ 19152457 (+)
sned1 sned1,LOC106560635,LOC107753672,LOC107694110 coding downstream 103034 19154077 ~ 19196248 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116 coding downstream 146758 19197801 ~ 19250494 (+)
G29640 NA non-coding upstream 386 19050226 ~ 19050438 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding upstream 359817 18688653 ~ 18691007 (+)
LOC113530672 NA non-coding upstream 583504 18464884 ~ 18467320 (+)
LOC113536874 NA non-coding upstream 690789 18358202 ~ 18360035 (+)
G29281 znf326 non-coding upstream 965180 18083719 ~ 18085644 (+)
G29656 NA non-coding downstream 141506 19192549 ~ 19195409 (+)
G29674 NA non-coding downstream 149272 19200315 ~ 19202099 (+)
G29792 NA non-coding downstream 208005 19259048 ~ 19259266 (+)
G29819 NA non-coding downstream 364562 19415605 ~ 19416908 (+)
LOC113533855 NA non-coding downstream 486942 19537985 ~ 19540117 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 102087 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 215103 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 233349 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 2649713 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 2868515 16181171 ~ 16182309 (+)
LOC113533886 espnl other downstream 10054 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 483302 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 949003 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1485930 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1963795 21014838 ~ 21017867 (+)

Expression


Co-expression Network