G29656


Basic Information

Item Value
gene id G29656
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19192549 ~ 19195409 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35019
GGATACTGGAGAGGTAGGGAAAACTGTGTGTAGATAGACGTCACATTTGCTTCAGGGAAGGTGCCATAGAGCAGTCAGGAAATTCAAGTCCTACCTCTGAGCACCTTTGCACCTTGAAACTCCTTAATTAGCATTTATTCACTGGTTGCAGTTCTGTTAGTATAACCTAAATTAATCGGAGTGCATTCAGTCACTGTAGACAACAGTACACAGGCTCTaCCACTATACTGCTGGCGACTTCATGAGGAACATCTTGCAAAATGTCACTCACATTCAGGCATCCTTCAGTCTTTCAGCAGTGGTAGAATGCAGAATGTTTGCCCAAGTTATCACACCTTCAAGCTGCTCACTGAAGAACCACAAATCATTTGACAACCTATACCCTTGCCCCAATACCATCCACACTTCTCCAGACAACGTGCAGCAACCTCACACTGTATGAGACCACTATGATCAATatctcaatcaatcaataaacagGGGCTTTGGTTCCTTCCGCCTTCCAGTCTGCTTATGTCACACTTCTGCTTAGGAAACCCATATTTGGCACTACTAATGTTAACTACAGACCTGTTTCCTTCCATCCATGCCTATTTAAGACCCTGGATAGTGATGTGCTCTCACAgctgttttcatattttcaacTGAATGACCTCCTGGAGGCCAGCCAGTCTGATTACAAGGCCGATTTACGGAAACTGCCCTCTTTGCAGTCACCAAGGTTttacacaaaaccacaaagAACTCTTTGTCTTCTGTCCTCACCAACACTGACCTGTCTGCTGTCTTTGACACTGTGATTAATCAGATCCTCATCATCTGACCTGTAATACCTACAGAAGCAATCCTAGGTACCGTTTCATCACCTCACAGCCTTATTACGAGAGTGCCTCAGGGGTCAGTACTTAGTCCATTCTTTGTGCCGCTGTATACTAAATCATTGGGCTCAGTTATCATGCCTTGTTGCTTCTCCTAACattgctatgctgatgacactcaacttTATACTCTTTTCCCTCCATCCACCTCCTAAGTCTCTCAGAAGATATCAGACAGCCTTTACAACATCTCTTACTGGATGATGTCTCAACCTCAACCTTGACAACAGTGACCTGGTTTACATACCAGTGAAGAAGCTTCTGCTGAGCTGGTCAATCACCATCGACACCCTCACAGTCTATCCAGGACACAGGGCTAAGAATCTATGGTTCTTGACTAAGCTCTCACTTAACAAAACTACTAGCTCGTCTGACAACTCTTATTAACAGCTTTCTCTGTGGATCCAGTGAGAGCAATAGGAGTAGAAGAATTTGCAATATCTCACCTTAAAAGCTGACAAAGATACAATATTCCCTTTGCTGTAATACTAAATCtctgattaaaatttttttaagaatttgtaAGAGCTTGTAAAAATTTGAATAATGATAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35019 True 1433 lncRNA 0.42 2 19192549 19195409

Neighbor

gene id symbol gene type direction distance location
crocc2 LOC108272137 coding upstream 40092 19097737 ~ 19152457 (+)
klhl30 klhl30,LOC107696751,LOC107753621,LOC107752665,LOC107694118 coding upstream 96522 19089884 ~ 19096027 (+)
scly scly coding upstream 131877 19052122 ~ 19060672 (+)
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding upstream 142799 18988003 ~ 19049750 (+)
atg4b atg4b coding upstream 234769 18951689 ~ 18957780 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116 coding downstream 2392 19197801 ~ 19250494 (+)
slco2a1 slco2a1 coding downstream 65710 19261119 ~ 19283561 (+)
rab6ba rab6b,rab6ba,LOC107552273,LOC107696768,LOC107694122,LOC103354239,LOC103151367,LOC102207753 coding downstream 89605 19285014 ~ 19367497 (+)
cep63 cep63 coding downstream 191279 19386688 ~ 19398717 (+)
amotl2a amotl2 coding downstream 232094 19427503 ~ 19436653 (+)
G29641 NA non-coding upstream 141506 19050824 ~ 19051043 (+)
G29640 NA non-coding upstream 142111 19050226 ~ 19050438 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding upstream 501542 18688653 ~ 18691007 (+)
LOC113530672 NA non-coding upstream 725229 18464884 ~ 18467320 (+)
LOC113536874 NA non-coding upstream 832514 18358202 ~ 18360035 (+)
G29674 NA non-coding downstream 4906 19200315 ~ 19202099 (+)
G29792 NA non-coding downstream 63639 19259048 ~ 19259266 (+)
G29819 NA non-coding downstream 220196 19415605 ~ 19416908 (+)
LOC113533855 NA non-coding downstream 342576 19537985 ~ 19540117 (+)
G29984 NA non-coding downstream 345220 19540629 ~ 19540910 (+)
LOC113533886 espnl other upstream 105338 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 243812 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 356828 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 375074 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 2791438 16398245 ~ 16401111 (+)
smx5 lsm2,LSM2,smx5 other downstream 338936 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 804637 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1341564 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1819429 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 3402186 22597595 ~ 22603436 (+)

Expression


Co-expression Network