G29792


Basic Information

Item Value
gene id G29792
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19259048 ~ 19259266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35172
atagtcttgagCCTTCATTGTGCACTGCACAGCTTCATGGCCCCCTGTGCCACatgcagcaaagcagccccaaaacatGACTGAGCCccctccatgcttcacagtaggTATGGTATTCTTTTCTatgaaagcttcattttttgtctgtgaacatACAGCTGGtgtgacttgccaaaaagctctagttttgtttcatcagtccaaaggacattctcccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35172 True 219 lncRNA 0.39 1 19259048 19259266

Neighbor

gene id symbol gene type direction distance location
ryk ryk,LOC107752642,LOC107696766,LOC107694116 coding upstream 8554 19197801 ~ 19250494 (+)
sned1 sned1,LOC106560635,LOC107753672,LOC107694110 coding upstream 62800 19154077 ~ 19196248 (+)
crocc2 LOC108272137 coding upstream 106591 19097737 ~ 19152457 (+)
klhl30 klhl30,LOC107696751,LOC107753621,LOC107752665,LOC107694118 coding upstream 163021 19089884 ~ 19096027 (+)
scly scly coding upstream 198376 19052122 ~ 19060672 (+)
slco2a1 slco2a1 coding downstream 1853 19261119 ~ 19283561 (+)
rab6ba rab6b,rab6ba,LOC107552273,LOC107696768,LOC107694122,LOC103354239,LOC103151367,LOC102207753 coding downstream 25748 19285014 ~ 19367497 (+)
cep63 cep63 coding downstream 127422 19386688 ~ 19398717 (+)
amotl2a amotl2 coding downstream 168237 19427503 ~ 19436653 (+)
sap130a sap130a,LOC108271984,LOC107696772,LOC107590658,LOC107552246,LOC108427679 coding downstream 189049 19448315 ~ 19463317 (+)
G29674 NA non-coding upstream 56949 19200315 ~ 19202099 (+)
G29656 NA non-coding upstream 63639 19192549 ~ 19195409 (+)
G29641 NA non-coding upstream 208005 19050824 ~ 19051043 (+)
G29640 NA non-coding upstream 208610 19050226 ~ 19050438 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding upstream 568041 18688653 ~ 18691007 (+)
G29819 NA non-coding downstream 156339 19415605 ~ 19416908 (+)
LOC113533855 NA non-coding downstream 278719 19537985 ~ 19540117 (+)
G29984 NA non-coding downstream 281363 19540629 ~ 19540910 (+)
G29985 NA non-coding downstream 281673 19540939 ~ 19541248 (+)
LOC117596099 NA non-coding downstream 293786 19553052 ~ 19582043 (+)
LOC113533886 espnl other upstream 171837 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 310311 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 423327 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 441573 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 2857937 16398245 ~ 16401111 (+)
smx5 lsm2,LSM2,smx5 other downstream 275079 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 740780 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1277707 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1755572 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 3338329 22597595 ~ 22603436 (+)

Expression


Co-expression Network