G29819


Basic Information

Item Value
gene id G29819
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19415605 ~ 19416908 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35203
GCTTGGTGAGTCGGTTGGTGTCAAAAGCATTCTACTGTCCCTGAGATTCCTTTGTGCTCACTCGGCCTGCGGCTCTGCAGCCCCATTTCCTCCTGCCCACTGAAATGCTAATTGTCCTAATGTTAAAAGTTGAGTGAGCCTCCCGACCCGAGTGCCTCCTATCAGGAAGTGGGGAACAATGGGAGCAGAGTGGCAGAAACACGTAGGCAGACAGACGGCTCGAGGTGGAGGGGGCTGTAGAGTCAGAGCCATTATTCCTCTTCCAGCAGTCCACTCAGATCAGCAGCCAGGCTGGACTACTCACAATGGACAACAATAGCTGGATGCTAAGTTACCTTCAGGATCAAATCTTTATACCACggatatagaaaataaattgcACTGAACTAATTGATTTGGCCAGAAAGGATATTCATAGCAGTTATCACAAGGTCaaataaatgtctaaaaaatGACAACCAAGTGGTTTGTCATGGGTGATTCTACGATTGGTACAATTCATAACTAAAAAATTAAAGttcatttttcaacattgaGGCTAAGAAAACACGTATTCAACTATTCACAAACACATCTCAGCCAACAGGCTTATTTTTACAAGGTTTCCTGACAATTGCTACATTTTGCCTTCAAATGAGTAAGAGGGTTGAGTCAAGTACacaaaaatgtggttaactagcatccaggCTAATAGCATGAGAACATCAAGGACATTCTAAAgatttgattaattaaaaaaa

Function

GO:

id name namespace
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU35203 True 740 lncRNA 0.42 2 19415605 19416908

Neighbor

gene id symbol gene type direction distance location
cep63 cep63 coding upstream 16888 19386688 ~ 19398717 (+)
rab6ba rab6b,rab6ba,LOC107552273,LOC107696768,LOC107694122,LOC103354239,LOC103151367,LOC102207753 coding upstream 48108 19285014 ~ 19367497 (+)
slco2a1 slco2a1 coding upstream 132044 19261119 ~ 19283561 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116 coding upstream 165111 19197801 ~ 19250494 (+)
sned1 sned1,LOC106560635,LOC107753672,LOC107694110 coding upstream 219357 19154077 ~ 19196248 (+)
amotl2a amotl2 coding downstream 10595 19427503 ~ 19436653 (+)
sap130a sap130a,LOC108271984,LOC107696772,LOC107590658,LOC107552246,LOC108427679 coding downstream 31407 19448315 ~ 19463317 (+)
LOC117595738 LOC108271985,LOC108271983,LOC108427680 coding downstream 48485 19465393 ~ 19474733 (+)
LOC113527823 LOC108271983,LOC108427680,LOC108271985 coding downstream 61070 19477978 ~ 19500607 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682 coding downstream 84688 19501596 ~ 19506857 (+)
G29792 NA non-coding upstream 156339 19259048 ~ 19259266 (+)
G29674 NA non-coding upstream 213506 19200315 ~ 19202099 (+)
G29656 NA non-coding upstream 220196 19192549 ~ 19195409 (+)
G29641 NA non-coding upstream 364562 19050824 ~ 19051043 (+)
G29640 NA non-coding upstream 365167 19050226 ~ 19050438 (+)
LOC113533855 NA non-coding downstream 121077 19537985 ~ 19540117 (+)
G29984 NA non-coding downstream 123721 19540629 ~ 19540910 (+)
G29985 NA non-coding downstream 124031 19540939 ~ 19541248 (+)
LOC117596099 NA non-coding downstream 136144 19553052 ~ 19582043 (+)
G29999 NA non-coding downstream 148902 19565810 ~ 19566023 (+)
LOC113533886 espnl other upstream 328394 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 466868 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 579884 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 598130 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 3014494 16398245 ~ 16401111 (+)
smx5 lsm2,LSM2,smx5 other downstream 117437 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 583138 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1120065 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1597930 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 3180687 22597595 ~ 22603436 (+)

Expression


Co-expression Network