G29984


Basic Information

Item Value
gene id G29984
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19540629 ~ 19540910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35396
tttttttttttgatattgaAAATACCCCTCCCTCCAGCATTTAATTACTATTCTACTGCATTCCAGTAGATTTGAGGATCATTTACAGCAATCTTCCTTTTCTTATCCTTATAATGTGCAGTGCAACACCTTTTGTgcacaatacacaaaatatgtACCACTAACCATGAACATCATCTATGATTGACACCGAGGTTACCATGGCTGCAGATGCACTCTTgctgcctttatttatttatttattttaactctcTATACACCAcggtgctgctgaattctcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35396 True 282 lncRNA 0.36 1 19540629 19540910

Neighbor

gene id symbol gene type direction distance location
inpp5d inpp5d coding upstream 7824 19509832 ~ 19532805 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682 coding upstream 33772 19501596 ~ 19506857 (+)
LOC113527823 LOC108271983,LOC108427680,LOC108271985 coding upstream 40022 19477978 ~ 19500607 (+)
LOC117595738 LOC108271985,LOC108271983,LOC108427680 coding upstream 65896 19465393 ~ 19474733 (+)
sap130a sap130a,LOC108271984,LOC107696772,LOC107590658,LOC107552246,LOC108427679 coding upstream 77312 19448315 ~ 19463317 (+)
lpp lpp,LOC108271779,LOC108427685,LOC107717931,LOC107590653,LOC107684332,LOC107696776,LOC107752632 coding downstream 47917 19588827 ~ 19803848 (+)
tprg1 LOC108272012 coding downstream 314220 19855130 ~ 19883588 (+)
tp63 tp63,LOC107574491,LOC103365775 coding downstream 343851 19884761 ~ 19956034 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding downstream 563294 20104204 ~ 20112519 (+)
LOC113537321 NA coding downstream 569220 20110130 ~ 20110225 (+)
LOC113533855 NA non-coding upstream 512 19537985 ~ 19540117 (+)
G29819 NA non-coding upstream 123721 19415605 ~ 19416908 (+)
G29792 NA non-coding upstream 281363 19259048 ~ 19259266 (+)
G29674 NA non-coding upstream 338530 19200315 ~ 19202099 (+)
G29656 NA non-coding upstream 345220 19192549 ~ 19195409 (+)
G29985 NA non-coding downstream 29 19540939 ~ 19541248 (+)
LOC117596099 NA non-coding downstream 12142 19553052 ~ 19582043 (+)
G29999 NA non-coding downstream 24900 19565810 ~ 19566023 (+)
G30049 NA non-coding downstream 279232 19820142 ~ 19820371 (+)
G30224 NA non-coding downstream 377235 19918145 ~ 19918368 (+)
smx5 lsm2,LSM2,smx5 other upstream 3432 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 453418 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 591892 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 704908 18774770 ~ 18835721 (+)
LOC113543059 c11h1orf146 other downstream 459136 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 996063 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1473928 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 3056685 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 4092696 23633606 ~ 23653555 (+)

Expression


Co-expression Network