G30088


Basic Information

Item Value
gene id G30088
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19599498 ~ 19613602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35516
atttagatgagtaATTGCACTTTTTCTTGAGTAAAGAATGTGGGTACTTTTAACACTTCTGATTActacacagaaatacagaattACACTGATGACAGAAAAATGATTAGACACACTGAAGTACAATGTTCCATTCAGGTAAATAACTCCACGGCTCATATAGGGAAGGGGTGGACAAAGCAGCAGCCCGGGCACCCGGGACAAGCAGATCAGCCCCAGGCTGTGCTATTAGTCTTTAATTCATAGTTGCTTGGTGGACAAATAGGTTccacaaccagaaaaaaaaatattccttattagttttcacaaatataaaggttttcatttggtatgtatgTTTAAAGTTAAAGTAATGCTAAGGGAATTACAAAGTACAGctcaaagctaaaaaaaaaataatgcttctGCTAGCACAAAACTTGGTCATCTAACTGTTAAGATGATAGTTGGACTTGAACATCTTTTAtatgtcatgctagaacagaaCACCGCAGCTTACAGCCAAAGCATTCACAACAAGCACAATGTTCTACTTGATCATACACTCATTTGTTTCCGTTGCCtgtattaatatacatattgtcagctaccactttttagcctagtcattCTTCCAGtaaaccaaaacatgggactgggcagcagaCTGGAGCTTTTAGttgcctggtgggctagctaataaattcaTGATTGCAATATTTACCGAAGTCTGACTGCTGCTCTTTTTGATGTGCTCTCTGTCTTAGACCAGACACGTGAAAACAGGGCAGGCAATCCAGATGGCCAACTTAAACCATCAATAATAAACCACATCTTTGTATATTTAATGTCTTCAAATTgcccagttaaaaaaaaaaactcttccaGATGAAGGTATGTAGCAAAGAATCCACATGCCATGATCCATTAGTGGCCACTTGGACCTTTACTTCTGCTTTTCAATAAGAGTACCACTGATCAAAGTATCCAACAGATGCattaacacaaatacacatgtaTACGGTTAAAAAGGATGTACACAAAAACAGCAAGTAACAGCAGACCCATCACAGGATCTACAAAAAAACAGTGCCATGTGCTGGGTTCTGAGGAGCAAATGAAGAAAAGGGAACACCATGTATGGTATTGCAGAGATGGAAATAGAAAGAGGAGGAAGTGGATGcatatgcattaaaaatgatgtgaattaaaaatgcatacaaTAAAGGCACAACAGACATAAGAGGATGGCAGTCATTTATATGAACTACTTATTTACTAAATACAGAGCTCTATGCCAACCATATTTATAGTATAACCAGTTTTCTTTGACACCTCCAGACCTAAAGCACAAACGTGTTTGACTGACAGTatgtaaaaacataaatgttaagAGACTatgagaaattaattaaatacagcAATCAAAGGTGTCACTGGAAAAGTATACTTGTAGTAAATAGAAGGCTGGCATATTTCCTATTACAgtgtattcagttttttttaactcagataaaatgttttaatagagaaagaaagaaatgaaaagcttATGAATAGTATCAAAATGCAGCAACAAACCTTTTTAAACATCAATCAGACCTGACAATGTAGAAGGCTATTAAACAGAAACTACACAAAGACAATTGCCCTATTTTAGCATTAGTAAGTGATAGAAATGTCCTGGTCAACCTGATAATGGTCAGAAATGGCACATAATTGCTCCCCGCTGTATACCATGATGCACTGCTGTTCTAAAGCAGTCAAGGGAGGCAATCCACTCCAGCTAGTCAATCATACATGCCCAAACACATCAGCAAGACTGCTATCTCCATACCATATCACAGCACAATGAATGAAACCTGTCCCAGCTTACAGCCCAGCACCCAAACACCTTCCTTCATTagcagagagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35516 True 1895 lncRNA 0.66 2 19599498 19613602

Neighbor

gene id symbol gene type direction distance location
bcl6aa bcl6 coding downstream 46805 19544152 ~ 19552693 (-)
trnap-ugg_1 NA coding downstream 218986 19380441 ~ 19380512 (-)
im:7152348 NA coding downstream 223334 19372430 ~ 19376164 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding downstream 622561 18970308 ~ 18976937 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding downstream 630047 18964291 ~ 18969451 (-)
tbc1d23 tbc1d23,LOC107574489 coding upstream 343115 19956717 ~ 19983297 (-)
tomm70a tomm70 coding upstream 372422 19986024 ~ 19999160 (-)
gfi1ab LOC108271917 coding upstream 412252 20025854 ~ 20032781 (-)
evi5b evi5,LOC108427692 coding upstream 425348 20038950 ~ 20101198 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding upstream 499343 20112945 ~ 20142257 (-)
G30085 NA non-coding downstream 15493 19583663 ~ 19584005 (-)
G30072 NA non-coding downstream 32498 19566751 ~ 19567000 (-)
G30071 NA non-coding downstream 32763 19566531 ~ 19566735 (-)
G30070 NA non-coding downstream 32987 19566283 ~ 19566511 (-)
G30059 NA non-coding downstream 43736 19553178 ~ 19555762 (-)
G30236 NA non-coding upstream 271866 19885468 ~ 19886738 (-)
G30246 NA non-coding upstream 300051 19913653 ~ 19913951 (-)
G30255 NA non-coding upstream 310161 19923763 ~ 19923979 (-)
G30270 NA non-coding upstream 371073 19984675 ~ 19985919 (-)
G30320 NA non-coding upstream 490650 20104252 ~ 20112518 (-)
trnap-ugg NA other downstream 782300 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 782686 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 783168 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1403870 18148228 ~ 18195628 (-)
G29279 NA other downstream 1526589 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 389757 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 746120 20359722 ~ 20429325 (-)
lepr lepr other upstream 1667762 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1835944 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2958830 22572432 ~ 22581943 (-)

Expression


Co-expression Network