glmnb (LOC108272089)


Basic Information

Item Value
gene id glmnb
gene name LOC108272089
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20003359 ~ 20014094 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35741
CTAGACTCTTTTGTTTATGTATCATTCCAAAAAATCTCTGTGATCAAAGAGCAGAGAGGGATAGTAACTAATCCGGAGCTGATTGAGGCCATTTGTGGAGTGCAGGCTGTGGTAGGACTGAGACTCAACAATGGCAGCAAATCAACTGGATGATGTAATTCAGAGATGGAGAAATACCCAGGGAAAAGATTTGACACCTGAAGATCATGAACTCTTTCTGA
>XM_026912656.2
CTCAGGCACTGTGCTTAATAAGAGCATTACAAAGAGATCTCTCCATGCTGCTGTCCTTTCATACACTTCGGTCTCAACATCATGGCTTGCTAGACTCTTTTGTTTATGTATCATTCCAAAAAATCTCTGTGATCAAAGAGCAGAGAGGGATAGTAACTAATCCGGAGCTGATTGAGGCCATTTGTGGAGTGCAGGCTGTGGTAGGACTGAGACTCAACAATGGCAGCAAATCAACTGGATGATGTAATTCAGAGATGGAGAAATACCCAGGGAAAAGATTTGACACCTGAAGATCATGAACTCTTTCTGAACGTTGGTCAAATGTGCATTGCTCAGGGTGACAGTGCACATCTGCTGGATTTTATCAGTGATGAGAAAAATCAGGACATAGTAAAGTCTATGGGTAGTGGTCTCCTAAGGCCACTGATTAAGGAGGTGGTGAGGAAAGAGAGGGATTCTGTCCACTGTCAGGCTGTGATCACACACCTTGTACAGGTCTGCAGTGCAGACAACCTCCTGGACGGCTTGCTCAGGCAAGTGGAGGAAACTGATCCTGATTCGATTGCAGACACCATCACTCTACTCATGCAACATATTCAACCGGTTCTGATGAGGCTTGGTGATTCAAAGCCCGCCTTTTTGGGCCTGGCCCTGGGTGCTCTGCACAAACAGATCTCGAAGCTGCCGGTACCATACACGCacaaacaggaagaggaagacgAGCACGGTCTCAGTCGCTGCTGCACTGCTCTGCTGACCTTTGTGCAGCCATTTGTGCAGGAAGTCAAAAGTCAAGATGCAAAAAGTCCAGTGGCAAACACGTATCATTCAAGACAAAGGACTGTGCTTCTCAAATTCTGCATGGCGAGTCTGAGGGAACCTCTCCTTGAAGCTCAGCTTGATAGGGAGGCTCACATGTCCCAAAGCTCTCCCCTCTGGAACTTTGCCACAGAAATCATGACTACTCTATCAGCAATCCAGGAGCCTCTGCCCAAACTCCTGTTTTACTATCCCTTGAGAGGGAAAGAAGACAAGAGAGTTGTGCAAGATGACAGTCATTTGCCTGAATCAAGGGCTTGCCTGGCCTACTTGCTCTTCGTCCAGCTTATTGCCATTGAACTGTTCCCTGCTGTCTTCAGCCCAGTGTTTGTTCTGCAGTGTAACATGGAGTACATCAACGTTTTATTGAGCAGaaaagATGAACCATGGATCTTGAAAGGTTTGGACTTGTATGTTAAAAGCTTGGAGAGAGTTCTGGATAACAGTCTTCCAGTAGAGTTGCTAGAGCTGAAGATTTTTCATACAGTTACACAAAACCTAATTCAAATTATGACTGACTGTCCTATCCAGCATTTGAGAGTAAAAGCTCTTGTGGTTTTTCAGCTTTTTATGGAGAAACTCAGTGGGGAAGCCAAGCATAAATTCTTCAGGTGCATAATGCGAACCAGTCAGCATTCAGGGGTGGAAAGTGTCATTCTCACAAACATCAAAAATCAAGTGGAGAAATCAAGCAAGTCAGAACAGATGGACAGCTGGTTTAAGGGGACATTACTGCTAGCGCTCCTGAGGGACACTCTGAGTTTACCTCAAGGCCCAGAGACGGACTTACTGCATGAGATGGACAGGGTCATGGTGTCTCTAAATCTTCTGAGATATCTACTtatcagagagagaaacaaatctacaggtATCTGGACAGACCTTTGTAACAGTGCCGAGAGCTACATAAAGATACTGCGTGTGTGTCTCAGCATGTCAAAATCATACTATGGGTCAGAACTAAAGAGACTTCACGAGGACAAAAAGGTCAAAGCAAAGGaATTGAAAGAGGTCTCAGGAAAGAAATCAGTTCAACATATGATTGTGAAAAACAAAGCGCTAGGTGGAATGCCGTGTGAGGCACAGGAGAAGGTCCTACAGTGTGCACTAGTTACATATGATCTGATGGAGAGTCTTGTCATCCGAATAGAGGAAATCCTAGAGGAGAGAgtgtaacattattattaccatcttttttttttttctttttaatcaagTCGATAATATCAATCCTATGTGTGATCagtatgtactgtgtgtgctAAACTTGTTaacttaaaatttaaattaaacttgctagaaaaagaagaaaactctAATCAGGAGCTGCCAAGAATAAGTTGTTTACTTACACCAAGGTAAACACATGCCATAT

Function

NR:

description
PREDICTED: glomulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35741 False 221 lncRNA 0.42 2 20012425 20014005
XM_026912656.2 True 2194 mRNA 0.44 18 20003359 20014094

Neighbor

gene id symbol gene type direction distance location
tomm70a tomm70 coding downstream 4199 19986024 ~ 19999160 (-)
tbc1d23 tbc1d23,LOC107574489 coding downstream 20062 19956717 ~ 19983297 (-)
bcl6aa bcl6 coding downstream 450666 19544152 ~ 19552693 (-)
trnap-ugg_1 NA coding downstream 622847 19380441 ~ 19380512 (-)
im:7152348 NA coding downstream 627195 19372430 ~ 19376164 (-)
gfi1ab LOC108271917 coding upstream 11760 20025854 ~ 20032781 (-)
evi5b evi5,LOC108427692 coding upstream 24856 20038950 ~ 20101198 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding upstream 98851 20112945 ~ 20142257 (-)
zbtb11 zbtb11,LOC106576566 coding upstream 132291 20146385 ~ 20156159 (-)
dpt dpt coding upstream 158034 20172128 ~ 20183294 (-)
G30270 NA non-coding downstream 17440 19984675 ~ 19985919 (-)
G30255 NA non-coding downstream 79380 19923763 ~ 19923979 (-)
G30246 NA non-coding downstream 89408 19913653 ~ 19913951 (-)
G30236 NA non-coding downstream 116621 19885468 ~ 19886738 (-)
G30088 NA non-coding downstream 389757 19599498 ~ 19613602 (-)
G30320 NA non-coding upstream 90158 20104252 ~ 20112518 (-)
LOC117599142 NA non-coding upstream 183126 20197220 ~ 20199516 (-)
G30412 NA non-coding upstream 185439 20199533 ~ 20207732 (-)
G30421 NA non-coding upstream 232511 20246605 ~ 20246871 (-)
G30422 NA non-coding upstream 233017 20247111 ~ 20247337 (-)
trnap-ugg NA other downstream 1186161 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1186547 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1187029 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1807731 18148228 ~ 18195628 (-)
G29279 NA other downstream 1930450 18070987 ~ 18072909 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 345628 20359722 ~ 20429325 (-)
lepr lepr other upstream 1267270 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1435452 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2558338 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2568209 22582303 ~ 22593861 (-)

Expression


Co-expression Network