LOC113543059 (c11h1orf146)


Basic Information

Item Value
gene id LOC113543059
gene name c11h1orf146
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20000046 ~ 20020226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35746
tttttttttttcgctgctTGAAAATCACACATTATTCACAGAGACAAGATTTAAGCTGACTGAAAGAGAGGAGCACTGCTTTAATGCTGAGCTGCTAAAGGTGTTTCTGTGTTAACAGCAAGGATTATACTACCTAATGCATTTGAAACATTTGAGTACACCAGGCTTCAGAGTCCTCATAGCACTTTTCGGGAGATTTATATGACAGGTTTGAGGAGGCGAGAGGATTGGTATTACAGGAATAAATGTGCTTTAGCATTTATAGTTTTTAATAACAGCTCCTGAGCTCCTTGACTGTTCCTATCATGTAGGATCTATGGAAattgttttagtttttagtgCATTCATGCTCTTAGACAATGTG
>XM_026941073.2
aaatactctcTTCTCTGTATACTATTCTCTCTGTATACTTTAAGCAATTTAAATGGCAAATAACAACACGGAGACTTTGTGGAAAACAACTGTTATTGTCAGTACTTCCCTTCAGAATAATGAAATTTCAGTGGTGCTTTTAGCACAACAACACCTACTTCGTTACTCAGACAGTATTGATGGCGGTACACTGGTCTTTCCTCTCTCAGGTGTGGCGTTCTTGTTGATCACCCCAGAGGAGTTTCCTGAAAAGGCTGAGTGTGAAGAATTCTTTAGAAGGATTGAAAAGTTCATCCAGGTCCACAGAAACAGCTTTCTTTTGCTCCAGGCGCCAGCATACGGCACAAGAGAATTGGAGATTGTGTCTGCAGTGCAGAACAGATTCTTTGGCAGTAATCTCAAAGTCTTACCTGTCCATAGTAATGGGGACGCTGTCAAGGGAATGCTAACCATCGCTAAAGCCACCAGTAAACCACATGTGGATCGTGTGCGGGAGCGGATGCATGTAGCTCGAGCTCACATCATCGAAAACAGCCTTGAAACATTGTTAAAGAAAGTGGAAATTTTTAAGGTCGTTTAATTTCCGTCAACTTTATTAGAGTCGTACAGTCAGAGTCCTGAGTCATATTTAAATGAGTCATAAGCACAAACAGCACAAACACCTGCCATGCAGCCGCACTCCTTCATCAACACATACAATGGTTAATCGCTTTTATTTTCTATCCCACTTTTTTAAGAATTTACGTAAAAGCTGTATTCAAGAATAACTGCTGCCTCCAgactattttctattacagcatcTACAAAGGCTTTCT
>XM_034310260.1
aaatactctcTTCTCTGTATACTATTCTCTCTGTATACTTTAAGCAATTTAAATGGCAAATAACAACACGGAGACTTTGTGGAAAACAACTGTTATTGTCAGTACTTCCCTTCAGAATAATGAAATTTCAGTGGTGCTTTTAGCACAACAACACCTACTTCGTTACTCAGACAGTATTGATGGCGGTACACTGGTCTTTCCTCTCTCAGGTGTGGCGTTCTTGTTGATCACCCCAGAGGAGTTTCCTGAAAAGGCTGAGTGTGAAGAATTCTTTAGAAGGATTGAAAAGTTCATCCAGGTCCACAGAAACAGCTTTCTTTTGCTCCAGGCGCCAGCATACGGCACAAGAGAATTGGAGATTGTGTCTGCAGTGCAGAACAGATTCTTTGGCAGTAATCTCAAAGTCTTACCTGTCCATAGTAATGGGGACGCTGTCAAGGGAATGCTAACCATCGCTAAAgcgatGATCTACGTGCTGTGGAAAAACCACGTATCAGATGCtgctactcaagaaaaatctggcaagctcagaggcatgaactacacacagcatGGTGTCAGTGATGTCGCATCTGTTTTCCACTGAACATTTATGGTGCCTGAACTGAAAAGATCTTGCACTTTAAATACCAGAATTCCAGGTAGGCCTCTGTCCTGTGCATGTTACATCTTAGTTACATGCTGGTACCAGAGGGAGGAAGAAACAACAGATCTATACTTCTACACCAGCACAACTACAGCTGAAGCCTGCGTGCCCTTTAGTAAATCGGCATTCTGATGGCAATTACTAGTGTTGACTTGTTCCCAATCAATACATACAGAGTGGGACGCTTCAAGTGCAGCCTGTATTTTTAGTAGagacactgtgtatgtgtgtgtgtgcgtgttagtGATCAATATGCCAGTGCCCGGTTACCCCCAGCAATGGAGCCCCGTCTTTATGGGCAAGTCCCTACGGCAGCGGAGGCTGGGATGTTACACGCGAACAGGCTGTCAAAATGATTTTGTCACTCCACTCATTCTGTGGTATTTGGAGATGCATACGTGCTGCATTGAGGGGTCCCTGTGTCTTTTTCGTGAGGTGATAGAGgcttttagctttttttccctccctccctttggCCTCCCTTTTTCCATTTGAGTGCCTGCTCAAGAGTTAAATCTAATAATACGTCTCACTCACTGGCCAGTGCTTCAGGTCAGTCAGCATCCATTTTGTTCTGAGCTTAtctgttttaatttaaacaatattgagtataatgtttttaaagagaagcttgtacaaaaataaattttactaCTGACTCTAATGGAGATCATTTGTAGATATATATTCTGTTGTATATGTCACAGAAAATTCTCTTCAGTCACATCGGTGCATTTACAGTATTGTAGAAGAGTCTCTAACTGAACTGGGTGGTGTGCCGCTTAGAAGAACTTTGATACGGCACAAGCAGATCAGGTTCTTCTTGGCATCATAAATGTTTCAGAGCGAGCAGGAGTGGAGTCTCAGCTCCATCAGAGAGCCCCTGCAGACCGGATCTGTGTCTTCTGCTCATGCTTCGCTGCTCTAGGCCTCAGCGTATTATTGTGCAATGTTCTGATTAAAGAGATTAGACattgcatttgtatttataaaaaaagtcacacaaacttCACGAGTGATCACATGATTTTACAcgtttttagacacttcacgTGTTATGTTCAcatgtaatgcattttatttctccATGTGTGATTATTTCACATCATTCGTTTAGTTTTACATGGTaaattttcacatgtaatgcaTGTAGATTCAGTATTTACTTGAATTCACACGTGCATTTTCAGAGTACAACATGGTGAAATGTGGCTTCACAAGTGATCACGTATTACTCAGAttatcacatgtgaaaaatgtgaacgATTTTTCCATAAGGGCTGTTATTCAGTGAAAGTGTGGTTTCAGATACgatgtgttgtgtttaatgaaCAGTGTTGTTCTGTTCATAGCTCGCTGCCCATCAGAGGCTTGAACAACGGCAACACTAAAACAGCATCACAGCTGTTCATGTAGCTGACTCGATCAGTAAGACGACTCTTGTGTTTCAGGTTAGACACATGAGGCATGTCTGAGGGAGCAGGTGAGAAAATGTggaagtgtgtttgtgaaattgaggtttttttctttggtgtttttttgtttttttgctgcagGTGTTTGGTtatgagacacacagacacacagaaaaagaTGTTTAGCAGAAGTGCTTGCTAACTCACAGTCGGGTTGATTCTTCAGTAGAAAGACACATGACCGTCCCCAGTTCCCTGAACAGACATTAGTACAGGCTTGAGCAAGCCTACGTCCAAGCATCAAATCATTCAATAAATCAGAACATCAAAAGCAACTTTACTTGAATGCCTTAGcatgaattttttattatatttaaggaaaatcttttgtcattttttttacccTGGCTGTCtttttcttgcttgctttctctctctgtctctccccttTGTGACACCATATGCTCGGCTTGGCTTGCTTGGCTTGTAATGGATCTTATGAATTTTTCAGAGAGATTCATAGCTTCCATCATCCCTGGTTAAGTCGAGGACTGTATCACCGAGCagcaactatttttttttttttcgctgctTGAAAATCACACATTATTCACAGAGACAAGATTTAAGCTGACTGAAAGAGAGGAGCACTGCTTTAATGCTGAGCTGCTAAAGGTGTTTCTGTGTTAACAGCAAGGATTATACTACCTAATGCATTTGAAACATTTGAGTACACCAGGCTTCAGAGTCCTCATAGCACTTTTCGGGAGATTTATATGACAGGTTTGAGGAGGCGAGAGGATTGGTATTACAGGAATAAATGTGCTTTAGCATTTATAGTTTTTAATAACAGCTCCTGAGCTCCTTGACTGTTCCTATCATGTAGGATCTATGGAAattgttttagtttttagtgCATTCATGCTCTTAGACAATGTGGTAACAAACATGATGTATGTGTGATATTAAAAGAGAAGTGTTTAAAACAATAACGTgataatttattgttttattcagaATAAAACAATATGTGCTTTCATAGTAGGGTTTACTGGTCAGTTCACTCAAAACTTATGatctaatttttaattaatttgatcACAGAATCAAATACATCATTTTATCTCTGCATGATATCTTGAATAACTGACATCTTGAATAACTCCTTACTCACAGTTGATCAGTCAGTGATATGTAATGTTAAATGAAGCAGGTAAA
>XM_034310262.1
aaatactctcTTCTCTGTATACTATTCTCTCTGTATACTTTAAGCAATTTAAATGGCAAATAACAACACGGAGACTTTGTGGAAAACAACTGTTATTGTCAGTACTTCCCTTCAGAATAATGAAATTTCAGTGGTGCTTTTAGCACAACAACACCTACTTCGTTACTCAGACAGTATTGATGGCGGTACACTGGTCTTTCCTCTCTCAGGTGTGGCGTTCTTGTTGATCACCCCAGAGGAGTTTCCTGAAAAGGCTGAGTGTGAAGAATTCTTTAGAAGGATTGAAAAGTTCATCCAGGTCCACAGAAACAGCTTTCTTTTGCTCCAGGCGCCAGCATACGGCACAAGAGAATTGGAGATTGTGTCTGCAGTGCAGAACAGATTCTTTGGCAGTAATCTCAAAGTCTTACCTGTCCATAGTAATGGGGACGCTGTCAAGGGAATGCTAACCATCGCTAAAggTCTGATCTACTGAATGGACTTTTAAGTTCTGGTTTAAAACATACATGCTCCTGAGACTCTGCAGGAAATCAGGGAACAGTGAAAGGAATGGGAGAAGCAAGGGCACTTAATGGAGCACTGCGTCTAAGGGCTACCAGTCGAGCGAGAAATCTGACTGATTTTCCACCAAACTACATTTTTACACCCAAGGGGTGAAGAGGCCAGTCagttaggaattacagcaaaGTGATGGTTTTGTAGGAACAGCTACTTCCTGGGGTTCACCGTCCTCAGTGGGACAGAATGATGGCAGAGTTGTGAGTGTGTTGTAGTAACTGCTTGTGTATTGGGGATTTGAAATTGAAAAGctgctttattgtttttttattgtcaatTTCCTTTCTAGCCTGATGTGTATGGGGCAGTTAGAGTGGGGCATGGGGTCATTTATAAAATCTGTTGATCGTAAGCTTAGAAAATGCATGATTTCCAGCCGTGTGAAAATGTACATGGAACATAATTACAAATCTTTTTAAGCAAGACTTTTGCAGAAGTGTGTCAGCATTGCGATTACCAGAAATACTTCCATATTCACC

Function

NR:

description
PREDICTED: uncharacterized protein C1orf146 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35746 False 364 lncRNA 0.39 1 20019584 20019947
XM_026941073.2 False 815 mRNA 0.41 5 20000046 20003325
XM_034310260.1 True 3279 mRNA 0.40 6 20000046 20020226
XM_034310262.1 False 1037 mRNA 0.42 5 20000046 20012351

Neighbor

gene id symbol gene type direction distance location
tp63 tp63,LOC107574491,LOC103365775 coding upstream 44012 19884761 ~ 19956034 (+)
tprg1 LOC108272012 coding upstream 116458 19855130 ~ 19883588 (+)
lpp lpp,LOC108271779,LOC108427685,LOC107717931,LOC107590653,LOC107684332,LOC107696776,LOC107752632 coding upstream 196198 19588827 ~ 19803848 (+)
inpp5d inpp5d coding upstream 467241 19509832 ~ 19532805 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682 coding upstream 493189 19501596 ~ 19506857 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding downstream 83978 20104204 ~ 20112519 (+)
LOC113537321 NA coding downstream 89904 20110130 ~ 20110225 (+)
atp1b1a atp1b1 coding downstream 179299 20199525 ~ 20207753 (+)
zgc:172121 LOC108271828 coding downstream 225348 20245574 ~ 20249458 (+)
si:ch211-201h21.5 LOC108271508,LOC108427703 coding downstream 238595 20258821 ~ 20265493 (+)
G30224 NA non-coding upstream 81678 19918145 ~ 19918368 (+)
G30049 NA non-coding upstream 179675 19820142 ~ 19820371 (+)
LOC117596099 NA non-coding upstream 418003 19553052 ~ 19582043 (+)
G29999 NA non-coding upstream 434023 19565810 ~ 19566023 (+)
G29985 NA non-coding upstream 458798 19540939 ~ 19541248 (+)
G30288 evi5 non-coding downstream 17509 20037735 ~ 20039974 (+)
G30382 nme7,LOC107732015 non-coding downstream 213749 20233975 ~ 20234772 (+)
G30436 NA non-coding downstream 313517 20333743 ~ 20334121 (+)
G30442 NA non-coding downstream 340364 20360590 ~ 20361838 (+)
G30445 pex5l non-coding downstream 347587 20367813 ~ 20368152 (+)
smx5 lsm2,LSM2,smx5 other upstream 462849 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 912835 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1051309 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 1164325 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 1182571 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 516747 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 994612 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2577369 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3613380 23633606 ~ 23653555 (+)
G32684 NA other downstream 4000152 24020378 ~ 24021036 (+)

Expression


Co-expression Network