G30436


Basic Information

Item Value
gene id G30436
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20333743 ~ 20334121 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35929
taataataataataataataataataataataataataattttgggGTGACACTCGCTGATATACAGGCCATCAACCCAAATTTGGCATTTATTTTTCCTGAACATATGACAATAGAATGGATACTTTGATTAGTTCCAGgagaaagtgtaaaagtgtgacCATAAAAAATGGTCATGTATCCGTAACTGTTTTAcacctgaaaatgaaaatagagGAGAATACACACAGGTTGGTTGAATGTCAGTTCTTTGGGGAGAGTTTCAGAAGGGGTGAAGGAGCTAGTTGCAATCATACATTACACAGTTCGACACTTAACTGTATAtagtttacacaaaatattcTTAATTTTGACATTGATAAGAGATAAGTAGAGCAAA

Function

GO:

id name namespace
GO:1902494 catalytic complex cellular_component
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03015 mRNA surveillance pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU35929 True 379 lncRNA 0.32 1 20333743 20334121

Neighbor

gene id symbol gene type direction distance location
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding upstream 52 20329443 ~ 20333691 (+)
actl6a actl6a coding upstream 9164 20315025 ~ 20324579 (+)
si:ch211-201h21.5 LOC108271508,LOC108427703 coding upstream 68250 20258821 ~ 20265493 (+)
zgc:172121 LOC108271828 coding upstream 84285 20245574 ~ 20249458 (+)
atp1b1a atp1b1 coding upstream 125990 20199525 ~ 20207753 (+)
usp13 usp13,LOC107659032 coding downstream 1510 20335631 ~ 20359651 (+)
pde6d pde6d coding downstream 133028 20467149 ~ 20472065 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding downstream 139150 20473271 ~ 20480074 (+)
ptmaa NA coding downstream 178668 20512789 ~ 20516555 (+)
meltf meltf coding downstream 324698 20658819 ~ 20671746 (+)
G30382 nme7,LOC107732015 non-coding upstream 98971 20233975 ~ 20234772 (+)
G30288 evi5 non-coding upstream 293769 20037735 ~ 20039974 (+)
G30224 NA non-coding upstream 415375 19918145 ~ 19918368 (+)
G30049 NA non-coding upstream 513372 19820142 ~ 19820371 (+)
LOC117596099 NA non-coding upstream 751700 19553052 ~ 19582043 (+)
G30442 NA non-coding downstream 26469 20360590 ~ 20361838 (+)
G30445 pex5l non-coding downstream 33692 20367813 ~ 20368152 (+)
G30448 NA non-coding downstream 38585 20372706 ~ 20373062 (+)
G30455 NA non-coding downstream 46649 20380770 ~ 20380982 (+)
G30467 NA non-coding downstream 70230 20404351 ~ 20404555 (+)
LOC113543059 c11h1orf146 other upstream 313517 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 796546 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1246532 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1385006 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1516268 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 202852 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 680717 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2263474 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3299485 23633606 ~ 23653555 (+)
G32684 NA other downstream 3686257 24020378 ~ 24021036 (+)

Expression


Co-expression Network