G30455


Basic Information

Item Value
gene id G30455
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20380770 ~ 20380982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35948
TAATACTTGAGAGAAAAATTCTTCTTTAGAAGTCCAATAGCACTGAATTTGGTGCTATTATCACAAAATATGACTCAGCTAATATGTAATTCtactcttttcctctttttagtTTATTATGGATCATGGCTTTTCTACCCACCTCTGTTCAGTGATCTCTGGTTAATTAGTGCATGCAGCGAAACACCGGAGTTTTAGTAAATACTGTTGCAG

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU35948 True 213 lncRNA 0.35 1 20380770 20380982

Neighbor

gene id symbol gene type direction distance location
usp13 usp13,LOC107659032 coding upstream 21119 20335631 ~ 20359651 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding upstream 47079 20329443 ~ 20333691 (+)
actl6a actl6a coding upstream 56191 20315025 ~ 20324579 (+)
si:ch211-201h21.5 LOC108271508,LOC108427703 coding upstream 115277 20258821 ~ 20265493 (+)
zgc:172121 LOC108271828 coding upstream 131312 20245574 ~ 20249458 (+)
pde6d pde6d coding downstream 86167 20467149 ~ 20472065 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding downstream 92289 20473271 ~ 20480074 (+)
ptmaa NA coding downstream 131807 20512789 ~ 20516555 (+)
meltf meltf coding downstream 277837 20658819 ~ 20671746 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding downstream 293419 20674401 ~ 20683491 (+)
G30448 NA non-coding upstream 7708 20372706 ~ 20373062 (+)
G30445 pex5l non-coding upstream 12618 20367813 ~ 20368152 (+)
G30442 NA non-coding upstream 18932 20360590 ~ 20361838 (+)
G30436 NA non-coding upstream 46649 20333743 ~ 20334121 (+)
G30382 nme7,LOC107732015 non-coding upstream 145998 20233975 ~ 20234772 (+)
G30467 NA non-coding downstream 23369 20404351 ~ 20404555 (+)
G30485 NA non-coding downstream 42745 20423727 ~ 20423933 (+)
G30489 NA non-coding downstream 47931 20428913 ~ 20429249 (+)
LOC113534552 NA non-coding downstream 99992 20480974 ~ 20484378 (+)
G30536 NA non-coding downstream 103483 20484465 ~ 20487210 (+)
LOC113543059 c11h1orf146 other upstream 360544 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 843573 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1293559 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1432033 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1563295 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 155991 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 633856 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2216613 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3252624 23633606 ~ 23653555 (+)
G32684 NA other downstream 3639396 24020378 ~ 24021036 (+)

Expression


Co-expression Network