G30536


Basic Information

Item Value
gene id G30536
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20484465 ~ 20487210 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU36033
TAAAAAGTGAATGAAAGCGAGAGATTGATTTGCTTTCTCTGttgcatgattaaaaaaaaaatccctttattgatttaattgccttttgtggtggtgttttttctGTCACTAATTTACATGCACCTTATGGAAATCAGCCATTTATCAACACTGAACTTGAGTAAGTTAAATGAAACCatgaacaaaatgacaaaagaaaagATGAACCAAAAaataggtaaggaataaaacacgaaatgatgtgctgttttaggaagaTGATAAACAATGGGgttcttatacaacagcaatttcccaacattattttattaactaaagaatgacacacaATTTTGATCagtgtatagttacatttaatcatgTGGAACATCCAGGACACAAGTTACGTCCTGTTGTCACATGATATAGAGactataaactgtcattccctcactttctctacAAGCGTAATAAGACAGTTTGTCATGTAACAGAAAAAACGGAAAGCACAAAGGCACAGTGGTTAGTTATAAAagaatgttagtgtgttacatGACAAAACATAGTtacataacttttgaaccagaaaaaatgtgatattgTTTGTCATGATCGGCTGAAATAATTATGATTAGGTGAATATGGAATGATTGTGACATGACTAAACAGGTACAATTGCATTCTAGATAAGAGACTGCTAATAAAAGTGGTAAAATGTTTCTTAACTGTTTGTTTACATGAGAAAATATGCATTGATTTGCTTATTTTAAGCAACTTCAACAAAATGACCAAACAGATATATTTGAAAGTGTGTCACTGACTTATCTTAGATCAAGGAACCTGAATGGTTTGCAGATATGAGCAAGATGAGTAAATCGTACCATTACACAGTGGCAGTAGGTCTCCACTGTCTGAGTCTAGGAgagcttcctgttttcatgtACACTGCTTTCCTGTGGCGAGGACAAGGAAACAGGCCTGTGACCAATCATAGCAAACACACAGGCTGTGGTCAGCTCTGAGGCTCCACACTGCAGAAGACTCACAcgtttatatatacagtactgtatattcagGGCTGGACagagtactgagaaattatacttaagtgaaaatatagataatgtgtcagaATCTTACTCGgttaaaagtggaagtaaaaATGTTGCTGCTTTTAAAAGGACACGTATTAAAAACCTTATATTACAACTGTAATGGACTTAAGtgacaaaaatacacaacatttCCGGAGAGACATGATATTTTGGACAAGAGTGCTTTCAGAGATGAGGAAGTCCTTCTGAAGTTGAGTGAGGTTGGCGTTTAGTAGATTTTTACATTagcacatccacatccacaagGCCTTAAAGGAGCTGTTTATAATTAATACTGTCCTCTGCTGACTGTGAGGTGAATTGCAGTTACAGTGAAATTATTGACAAGGCTTGTCATTTCCCACCATCTGACCCCACACTCTTTTGAGTTGTGTTTTAAAGCAGAGCTAATGTTTTTTGTGATTAAtacagaaacacttttaaatttTCATCCCCTGAGAAAACAGGATGTTTTGTATATTAACCGCACATTTATGTTTCCTCACTTTAATGTTTTCAGAGCATGAAAACTGTCATAGAAATGCCATTAATACTGACATTGAAGTGTCACAACACTGGAAATGAGAAATCCTTTATTCTCCTGGTATGTGCTTGACAAAGTGATCTTTAATGTACAGGTGATTGCATTTCTTGCAAGAGTTCCAACTCCTGCACTCATGACTCATGAGTGATAGGTGAGAAAAATcaatctttttaatttttaatactgttttttatttggttATAAATAATAGAGAGACAAAAGAACTCCGCTAAAGGTCAGAGTAAATAAATCGAAAGCATTTTTACACTTGTTTTGACGTTGTGCCACAGTATCACGGTCCTATAAAAACCTCTCTCACCTGTCCTGCTCTTAAAATGCTGTCCATCATCTTGTGTTTTGAAGAGGATCTTGCATTGTAACCTCAGACTACATTACAAATTGGTCATGAACAATGTGCGTCCTCAAGCATGAGATACATCAGCAGTGACCTTTATGataataaactgtttactgTATCTCCACACCACAGAGCTGTCCTCTGACTGTAAAATGATGACATAATCAGCGCGAACGGCTGGACTGTAATGTCGACATGGCTGCCAGGTTCGAACATTCACGCAGGAAATGTTTCAGTTCGGGTTGAGTAGCGCTTGTTCTCCCCAGAGATTCATGCTGAAACAATGATAAATTGAGTTGTCTGTAGGAGGTGCCTTCTAAAACtagctttctttttaaaaaactttcGTCTAAAACTGAGAATTTACGTTAAATTATGTGTCTGAATGATATTTGCAGACATTGGAGAATATGACACAggacagctctctctctctctctttctctgtgtttgtgtgtctggtTTTTTTTATAGGGGGAGCGGGGGGGACCgatgtttgtgtgttgtcaCCTCTCCAATGCAAAACCTAATCtcaactttttttccttttgccgAGGAAAGGCCAAGAGGGTCATCACCAGTTATTATCTTTCTTCCATGTGCATGTTTCTGAGCACTTGTTTTGCAGTAAGTGCGTATGCATGTTGATTACTCATGAGGAGCTGGTAGTGGGTTGAAGTGGGCCAGAGGGTTCAGCTGTTCCTGAAACTCTCACCCTACTAATGGAAACTGGCCTTCACAAATGGCAGCAACACATATGACTTTGAATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36033 True 2746 lncRNA 0.37 1 20484465 20487210

Neighbor

gene id symbol gene type direction distance location
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding upstream 4391 20473271 ~ 20480074 (+)
pde6d pde6d coding upstream 12400 20467149 ~ 20472065 (+)
usp13 usp13,LOC107659032 coding upstream 124814 20335631 ~ 20359651 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding upstream 150774 20329443 ~ 20333691 (+)
actl6a actl6a coding upstream 159886 20315025 ~ 20324579 (+)
ptmaa NA coding downstream 25579 20512789 ~ 20516555 (+)
meltf meltf coding downstream 171609 20658819 ~ 20671746 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding downstream 187191 20674401 ~ 20683491 (+)
shroom2a shroom2 coding downstream 337130 20824340 ~ 20871696 (+)
cldn34a cldn34 coding downstream 389735 20876945 ~ 20880467 (+)
LOC113534552 NA non-coding upstream 87 20480974 ~ 20484378 (+)
G30489 NA non-coding upstream 55216 20428913 ~ 20429249 (+)
G30485 NA non-coding upstream 60532 20423727 ~ 20423933 (+)
G30467 NA non-coding upstream 79910 20404351 ~ 20404555 (+)
G30455 NA non-coding upstream 103483 20380770 ~ 20380982 (+)
G30543 NA non-coding downstream 17829 20505039 ~ 20505637 (+)
G30545 NA non-coding downstream 19113 20506323 ~ 20506646 (+)
G30620 NA non-coding downstream 193190 20680400 ~ 20680770 (+)
LOC117599214 NA non-coding downstream 283345 20770555 ~ 20781908 (+)
G30715 NA non-coding downstream 348277 20835487 ~ 20889710 (+)
LOC113543059 c11h1orf146 other upstream 464239 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 947268 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1397254 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1535728 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1666990 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 49763 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 527628 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2110385 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3146396 23633606 ~ 23653555 (+)
G32684 NA other downstream 3533168 24020378 ~ 24021036 (+)

Expression


Co-expression Network