G30545


Basic Information

Item Value
gene id G30545
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20506323 ~ 20506646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU36042
ATAGTTTTAGCACTGTACActtcaaatgaatgaatgctcctttacaagataaaaaaaaaatctgattgtaATGATTAACCCCGAAATTATTTTAGCTTATGAAATcaacatttctgtttataagTGTAAGAAATATGAAAGAGTCAAAAATCTCCAAAATGTCTCTCAAGACTCAAGCTTAAGCTAAGCACAATATCAATATGAAAATGGACTTACCCAAAAATCAGGGCTCAGTGTAGTCATAATGATTTAGTCCTGTCCTGCCTGATGAGAACTTGCTGTGAGCACTCCTCTTACCTATCACCCCTGAATGGGAGCTGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36042 True 324 lncRNA 0.35 1 20506323 20506646

Neighbor

gene id symbol gene type direction distance location
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding upstream 26249 20473271 ~ 20480074 (+)
pde6d pde6d coding upstream 34258 20467149 ~ 20472065 (+)
usp13 usp13,LOC107659032 coding upstream 146672 20335631 ~ 20359651 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding upstream 172632 20329443 ~ 20333691 (+)
actl6a actl6a coding upstream 181744 20315025 ~ 20324579 (+)
ptmaa NA coding downstream 6143 20512789 ~ 20516555 (+)
meltf meltf coding downstream 152173 20658819 ~ 20671746 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding downstream 167755 20674401 ~ 20683491 (+)
shroom2a shroom2 coding downstream 317694 20824340 ~ 20871696 (+)
cldn34a cldn34 coding downstream 370299 20876945 ~ 20880467 (+)
G30543 NA non-coding upstream 686 20505039 ~ 20505637 (+)
G30536 NA non-coding upstream 19113 20484465 ~ 20487210 (+)
LOC113534552 NA non-coding upstream 21945 20480974 ~ 20484378 (+)
G30489 NA non-coding upstream 77074 20428913 ~ 20429249 (+)
G30485 NA non-coding upstream 82390 20423727 ~ 20423933 (+)
G30620 NA non-coding downstream 173754 20680400 ~ 20680770 (+)
LOC117599214 NA non-coding downstream 263909 20770555 ~ 20781908 (+)
G30715 NA non-coding downstream 328841 20835487 ~ 20889710 (+)
G30721 NA non-coding downstream 341845 20848491 ~ 20851676 (+)
G30747 NA non-coding downstream 456786 20963432 ~ 20963641 (+)
LOC113543059 c11h1orf146 other upstream 486097 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 969126 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1419112 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1557586 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1688848 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 30327 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 508192 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2090949 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3126960 23633606 ~ 23653555 (+)
G32684 NA other downstream 3513732 24020378 ~ 24021036 (+)

Expression


Co-expression Network