G30552


Basic Information

Item Value
gene id G30552
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20492484 ~ 20495517 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU36049
TTAAAGGAGCTATTAGAGTACTAGTAGCCTAGTACGTACAAATTCCAGGTAAAGGTGCAAAAGATGTAACCTTGAGGGTACCACACCACTGCCAAggaaggtacagtttagtaccctatttctaagagtgtacaccATAAACCTGTTTGATTTATTAGCATGTTCTTGATGAAGATTACACTGGCCTAAACTTGCATTTGTGATTATaacaatgaatattttaatgtaaactttgTAAATCTGTTAGTCTACTTGAACAAATTACTCCCATACGAaccacatcatacttttattgTGTATACCTGTGCTTTCTATGCCTAATTACAGTTAAATAGTGGTTGGTACAAGTTATCAACTGTAGAAGCATGTTGGGATGCGTTTATAGGATCATCATGATTAGATTTTCATCCAGATTTGTTTGAAACTTGACATTTTGTTTGGGGGGAAAACTTGTCCAACCTGCTGTTGTTTATTGCTCAGATTACTGCATCAGTAATAACCTCACATAACCTTTAAAGGCTCCCTGAGGTAAAGCACATTCCTTATGACAGTGCAGGTATTTAGTTCATTAAGCTTAGGTTACATTTATGTACATGATTCCTAAACATATAGATTAGGGAATTAGCAACTGTGTATGTTTTAGTGATTTGAAGTTGGCAGAAAAACAGCAGGTTGAAACCCAGACCGAGTTTAAAGCTGTTGCAGCGAGACACCTGCGCGCGCGTCACGACCTGAGGCGTGAAAactggagaaaatggagggagCGCCTGAAAAAGGCTTCATTTACACTTTCACAAATGTCAGCTACGCGCCATTTCTACAATATCATCATTGTTATTCAGTCctaataagtgaataaataaataaatatcagtagTCTAAACGAATGTTACGAAGGCATGTAGGCGTCGCGTGCTGTTTTTCATTGCTTTCCCAATGAGCAGTAGCTCAGCACTGCTCTTCTTCCACCATGACACGACATGCCAAACCAAACCTGCTGGCCGTGATAATGCGAAATGGCGGACGCGGAGGAGGAGCTGTTAGTACGCATGCGTGAGATTGGTGCGCATGCGCGGTGCAACAGGAGGCGAGGACGGAGAAACGTGACACTGCGCAGGTGCTGGTGGCCATtgaggtggaaaaaaacaagatatgGATGAACCTCCACACATGGATCTGGACTGGCACTGAATTATGGCCTGCGCGTCTATGCTAGTCCCAATGACTATGCTGCTccgttttatattttttaaacatcaccTTAAGGTCTTGTTTCAGTTTCCTCAGGACTCTAAATGAAAAACGTTAAATAATAATCGAGCAGGAAAGGAAAGCAGTGGACAGAAACACGAGCAAATAAAGCTAGGCTAATAAACTATGagtgtgaaaaatgtgtctGAAATTTTTAGACTCTTTAGAAATTAGGCAGAATTGGCTTCTGGGTATGAACCAATAATAAAGCCTTCTCTTCTCCCCCCTGTGGCATTTGGATACAATAGTTTGGTTTAACTATATGTTGATTTTTGTGACATATTTTACTCACAAAATTAGCACTCCAGGCTAAGGGAGTCCAGACATGGGAAACTGAGGAATGTGAATAATTTTTACACAAGTCTATACAAGTAATGTTTTCTTATCAGAGGAGAACTATATTAATGCTGATTTCATTTGAAAAAGAGAGATTTCCTGTGTTTCTATGGACAGAAAGTGTCTTTAAATATCCTTCATAAGATGTGGAGCTACTGACTAAAATACCAGTAAAGTAAGAATATGTATTCAGAAATTGCACATCAGACACAGTGGTAACCCTGCTTTCCCCTGCTGTGGTGTTTGGTTCTCAGAGAAAGCTCTCTGGTGTCTCATACTAGCCAAGACATGCCAAGCAGGAGTGAAATAACTGACACCAAACAGATCAACCCTTCCAATCCTGTCACCTCTTTCAGCAGGGAGTGGATATTCTGCAGTTTATGTCTTGGTCCACATGtatttgcttcatcctggtcagggataTCCTGCAACACTGGATGTGAGGAAGTACTACACTTTGGATGGGACCCCAGGTTGGAGAAAACTGGAttacccacacagacacagggagaacacttGAAACTCGGCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36049 True 2118 lncRNA 0.41 2 20492484 20495517

Neighbor

gene id symbol gene type direction distance location
mrpl47 mrpl47 coding downstream 164025 20324858 ~ 20328459 (-)
tmem131 tmem131,LOC107659030 coding downstream 182258 20265313 ~ 20310226 (-)
LOC113534100 bivm,LOC107548643,LOC104949108 coding downstream 233931 20250115 ~ 20258553 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding downstream 246476 20207755 ~ 20246008 (-)
dpt dpt coding downstream 309190 20172128 ~ 20183294 (-)
lrrc7 lrrc7,LOC107709201 coding upstream 188030 20683547 ~ 20814820 (-)
zgc:153311 LOC108271850 coding upstream 389008 20884525 ~ 20886833 (-)
lurap1 LOC108271563 coding upstream 467872 20963389 ~ 20978637 (-)
ttc4 ttc4,LOC107709194 coding upstream 494168 20989685 ~ 20994441 (-)
pars2 pars2 coding upstream 500571 20996088 ~ 20999389 (-)
G30551 NA non-coding downstream 9783 20481180 ~ 20482701 (-)
G30550 NA non-coding downstream 11758 20480112 ~ 20480726 (-)
G30507 NA non-coding downstream 88076 20404209 ~ 20404408 (-)
G30428 NA non-coding downstream 176973 20314838 ~ 20315511 (-)
G30423 NA non-coding downstream 243975 20248166 ~ 20248509 (-)
G30561 NA non-coding upstream 11635 20507152 ~ 20507352 (-)
G30879 NA non-coding upstream 11865 20507382 ~ 20548637 (-)
G30899 NA non-coding upstream 80444 20575961 ~ 20657383 (-)
G31070 NA non-coding upstream 464655 20960172 ~ 20960391 (-)
G31094 NA non-coding upstream 567377 21062894 ~ 21065738 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 63159 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 478390 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1675286 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1675672 18794025 ~ 18816812 (-)
lepr lepr other upstream 785847 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 954029 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2076915 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2086786 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 2726776 23222293 ~ 23225548 (-)

Expression


Co-expression Network