Gene
RNA
| Item | Value |
|---|---|
| gene id | G30620 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 20680400 ~ 20680770 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU36141 | True | 313 | lncRNA | 0.41 | 2 | 20680400 | 20680770 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| meltf | meltf | coding | upstream | 8654 | 20658819 ~ 20671746 (+) |
| ptmaa | NA | coding | upstream | 163845 | 20512789 ~ 20516555 (+) |
| phb2b | LOC108427714,LOC107692360,LOC102296991,LOC102211951 | coding | upstream | 200326 | 20473271 ~ 20480074 (+) |
| pde6d | pde6d | coding | upstream | 208335 | 20467149 ~ 20472065 (+) |
| usp13 | usp13,LOC107659032 | coding | upstream | 320749 | 20335631 ~ 20359651 (+) |
| shroom2a | shroom2 | coding | downstream | 143570 | 20824340 ~ 20871696 (+) |
| cldn34a | cldn34 | coding | downstream | 196175 | 20876945 ~ 20880467 (+) |
| wwc3 | wwc3 | coding | downstream | 213253 | 20894023 ~ 20948637 (+) |
| ttc22 | ttc22 | coding | downstream | 301762 | 20982532 ~ 20988867 (+) |
| wdr78 | wdr78 | coding | downstream | 318713 | 20999483 ~ 21011730 (+) |
| G30545 | NA | non-coding | upstream | 173754 | 20506323 ~ 20506646 (+) |
| G30543 | NA | non-coding | upstream | 174763 | 20505039 ~ 20505637 (+) |
| G30536 | NA | non-coding | upstream | 193190 | 20484465 ~ 20487210 (+) |
| LOC113534552 | NA | non-coding | upstream | 196022 | 20480974 ~ 20484378 (+) |
| G30489 | NA | non-coding | upstream | 251151 | 20428913 ~ 20429249 (+) |
| LOC117599214 | NA | non-coding | downstream | 89785 | 20770555 ~ 20781908 (+) |
| G30715 | NA | non-coding | downstream | 154717 | 20835487 ~ 20889710 (+) |
| G30721 | NA | non-coding | downstream | 167721 | 20848491 ~ 20851676 (+) |
| G30747 | NA | non-coding | downstream | 282662 | 20963432 ~ 20963641 (+) |
| G30791 | NA | non-coding | downstream | 412844 | 21093614 ~ 21093816 (+) |
| dlg1 | dlg1,LOC108271975,LOC108427717,LOC107738730 | other | upstream | 22320 | 20536973 ~ 20658080 (+) |
| LOC113543059 | c11h1orf146 | other | upstream | 660174 | 20000046 ~ 20020226 (+) |
| smx5 | lsm2,LSM2,smx5 | other | upstream | 1143203 | 19534345 ~ 19537197 (+) |
| LOC113533886 | espnl | other | upstream | 1593189 | 19061097 ~ 19087211 (+) |
| boka | bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 | other | upstream | 1731663 | 18932683 ~ 18948737 (+) |
| insl5a | insl5 | other | downstream | 334068 | 21014838 ~ 21017867 (+) |
| tmem69 | tmem69 | other | downstream | 1916825 | 22597595 ~ 22603436 (+) |
| uhmk1 | uhmk1,LOC107692420 | other | downstream | 2952836 | 23633606 ~ 23653555 (+) |
| G32684 | NA | other | downstream | 3339608 | 24020378 ~ 24021036 (+) |
| LOC117598985 | NA | other | downstream | 3972220 | 24652990 ~ 24656248 (+) |
