G30721


Basic Information

Item Value
gene id G30721
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20848491 ~ 20851676 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU36252
tttCTTTTGCCAAAGTCAGTAGTGAGTGTTTTTTCTCTGGTAGTTGattgagagaagaaaaaaaatgttggtggCCGCTAGCCTACTTGAAcaaaactatgaataaaaaaaataacagcctGGACACAATCTTCTTGTCCCAGGCTTCTGATTTGCCCACCCCTGCATTAGTGAATGGTAGGTTTTTAATAAATCCTAAGTTAGGGTTTACTTgctgttattgtgttttttgCAAACAGCACCactttctgttgttgtagcaGATTTGCATTCACACTGGTAGGCAATTTTCTTGGTGCTGGGTTCAAACACAGGAGGGTGTGTATCAGACctttttttcatgcaaatgGGGTGAATCTGTAAAAATGTATGACGTACCTGTGTATGTTGAGAAACTGGTATATGTAATGGTTGTCTAGACCTCCAACTGTCTAATCCCTAATCCTTTTTTATGCTGGTATTTTGAATATATATCTGTGCAGGTACTCAATGTCCACAGGGACTGGCTTATCTCAGACTAATGAGGAAATAGGGCTGTCAGAACTTGCTCACATCTGAGGGCGTTGTCTGTGTTTTGCATATGGTGACCTCATTTGAAACTGTGAAGTCATACAGAAAGGAACGAATTGCCAGGCTTGTTCACGTCAAAGCTTTGGAGGCATGATGTGTAGGTGAAAAGGCATTTGTTTAGCAGGAGCCTTCATTTTTCTTGACTGAAGTAATCTGGCAAATTTATCTTGAACTGTTACTCAGGTCCTAGCATGAGTAATGGTTTTGCGTGGGATCCAGGTTTCAAAACACACCTGTGCAGAGCTGGAACTGCTGCATTGGGATTAGGAGGATTTGGAGGcagtttattttgcattatttctcACACCTTGTCTTACAGGCTGTCTGGTTTGCAGCTTGAAGAAGTGTGTGAAGGATTAGAGGCTATTATATTCAATTTAAAAGACTACAGTGCTGCTTCTGTATTCTGTTTTCTACAAATGTAACGCAACCAGTGCAAAGGAAGAGCTCAAAATGATTTGAAGTAAAAGTAACTGACACATGATAGCCACCTGTTTCTGTTAGCACACCACAAAAGAAGTCTCCATTCCAGTCGAATGAGTGCACTGCACACTGACCCACTGAAACAAAAGTGGCCTGCAGATTGCTCTATTGTTGCTCTGGGCATCTGTAGTGCCCAGTACACTTTGTTTGTCTGGTCATCTGAGGCACTCATGAGCTTGTGAGGACACAGTTAGCTGGTAGGCAGCCATCAGCGTTACCTCACATGACAGCACAGTGCccttataatataattataatataattttgctcttataataactccactcttctgggaaggctttccactagattttgaagcgtggctgtggggatttacccattcagccacaagagcattagtgaggtcaggaactGTTTCATGGGGACTTTAAGTACAAGACTGTAAATGATATCAAAGATAATCTTTGATGTGTTCAATGTACAATACAGCAAAATCTTCCCATGCTTCCTAATAGAACAGTGCTTTTATGTTGAAAATATCCACTGATTGTCAGAGCACTGGTTAACTGCTCAAAAGGAGTGGATCATTCAGCAATCTACTGCATGCTCGGCTTTGGACCATGAGACAGTTATTACTGCCATCTGGTGGTAATGAGAGAATTTGTCCATGTAAGCGCAagtagaacaaaaataaataagcataatGACCAGGTTATAGATTTAGcatactgtatttaatatttgataCTAGTATACAGCACAGTACAAGCAAGTAATAGAAGGAAGAGTTACATGCTACATGCTGTAACAAGTTTTACTGATACATGGTTGAATATGCACATGCGAATTGCACAGTGTAAGCACCAGCACACACAACCATGCTTTACTTGGGTTaggctgtttattattttgctgtgACAAGATTTAAGAAGTATAAAGGAGAACCTGAGTACTGACTGACTTCACTTTGTGGTAAGACTTGCATTTGATGATCAGATAGCATTTAAccacataaaaaaaagcagGTCGGAATGTGGTGGGATCATTGAGGTCACCTCCGGCGGTTGTCTCGCTGGCAGTCTGATCGGATTTCAGGCAGGTGTAAATGCCGTCTGCACCACGTGCTCGCATTTAGACATTAGGGATAAAGCACCTGCCCACAGAATACATCATCATTTTATTCCTAAAAACAtagcaaagaaaccttgtcgACAAAGGAAAAGTAAATACAGACTGTACAATAAAATCATCTCTAGTGATTCCACTCTTTTGCCAACAGCTGACATACCAGGTATACACGAgtcactgttgaattctcagatcagattcatttcctgtaacagtggtttatattaatgcactcattctgatgcattcaaaaacattctaatcatttctacagtaacagttAATTCACAGGGGTTTGTATGTATCCACGTAATCTATGtctaataacaataaatggatataaaatatatcttgttatttaacaaagacgtataattgttgatatggtgaagctttctgtaaggagatgtttatttaatatttatagaaggagtctcggGTGTCAGCGagagtaagttttccaccatgggaaaatcttcaggacagaggactttgcactttcccatttctcagtaacattacAAGTCTTATtaatagaaaaagagaggcggatgagagaacaactgtttatagctgctacaatgcaagtgataacaagaGCTAACTTGTTCCTCAGCATTAAGTGGAactataaacaattaaaaatatggcatgttgttcattaattcattacaaATGGTTTTGCTGACAGTTTGCTATAAGAAGACAAAATGGTgtaagagcaataaaaaaaaattgtgtccTGCTATTGGAAAGCTTCAGGGTTGTACCGCCCCACTGCTTCATACTGAGCTGCATCACGCCACCCCAGCAGCACatagctgtgttttattcattgattATATTAACCTGTTACTGTTACTGGATATTATTATAACCCGTAATAGAGCGAGTGTAAATGCAGTGTGTTACTTATTTAGCCGTCACCTATACACCAATTGTTTTGTCCAAGTTTTGTTGTCTGATAGAGTAACGCTCGTTGTGAAGTTGAGCTGTAGTCCATCATGACTgctctgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36252 True 3161 lncRNA 0.39 2 20848491 20851676

Neighbor

gene id symbol gene type direction distance location
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 165000 20674401 ~ 20683491 (+)
meltf meltf coding upstream 176745 20658819 ~ 20671746 (+)
ptmaa NA coding upstream 331936 20512789 ~ 20516555 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding upstream 368417 20473271 ~ 20480074 (+)
pde6d pde6d coding upstream 376426 20467149 ~ 20472065 (+)
cldn34a cldn34 coding downstream 25269 20876945 ~ 20880467 (+)
wwc3 wwc3 coding downstream 42347 20894023 ~ 20948637 (+)
ttc22 ttc22 coding downstream 130856 20982532 ~ 20988867 (+)
wdr78 wdr78 coding downstream 147807 20999483 ~ 21011730 (+)
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding downstream 557078 21408754 ~ 21448083 (+)
LOC117599214 NA non-coding upstream 66583 20770555 ~ 20781908 (+)
G30620 NA non-coding upstream 167721 20680400 ~ 20680770 (+)
G30545 NA non-coding upstream 341845 20506323 ~ 20506646 (+)
G30543 NA non-coding upstream 342854 20505039 ~ 20505637 (+)
G30536 NA non-coding upstream 361281 20484465 ~ 20487210 (+)
G30747 NA non-coding downstream 111756 20963432 ~ 20963641 (+)
G30791 NA non-coding downstream 241938 21093614 ~ 21093816 (+)
G31260 NA non-coding downstream 533330 21385006 ~ 21385342 (+)
LOC113526220 NA non-coding downstream 550566 21402242 ~ 21406386 (+)
G31384 NA non-coding downstream 757557 21609233 ~ 21612878 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 190411 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 828265 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 1311294 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1761280 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1899754 18932683 ~ 18948737 (+)
insl5a insl5 other downstream 163162 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 1745919 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 2781930 23633606 ~ 23653555 (+)
G32684 NA other downstream 3168702 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 3801314 24652990 ~ 24656248 (+)

Expression


Co-expression Network