G31454


Basic Information

Item Value
gene id G31454
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21389477 ~ 21412173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37101
gaccgaCCACATATTCCCCTTCTGCAGTGTATGTTTTAGACTGTTTAAGGTGACAGTAAAAGTCTGAATAAGTTGCCTATATTGCTCCAGTCCTCTAGATAAATGAATGCAAGTAAACAGGCATGTTTTAGTTCACACTCTGGAGCATTAGGACACGTGGCAGTGTTTACCTTGTGCCTCGTTTACCATTTATCCTTGTCCTgccattcattatttattctttataccacaaaataaacattaacatgcAGGTTAGTCCCCGCATCAGGGCGGTTGTTGGAACAGTGGGACAGCAGTTAAAGCTTCGCGCTACTAatcggaaggttgtgagttcaaatcccagcactaacGAGCTGCCGCTGTTATGCTCTTCAGCAAGACTCTTAATCCCTGTGACAATTGTATCTTAtctcatttgtaagtcactctggataaaggcatcaaccaaatgagtaaaatggaaataaagcagggaaaaatgtgtattataaactttaattatctttattacgatttattgtcatttttcttCAACACCGCAGTGATGGTTTGTCATTTAAGCGTGCATTTTAGGTCTTATTTTAATGACACAGACTGCTGTTTAAACACGTACATGCACGAactttttttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37101 True 652 lncRNA 0.41 3 21389477 21412173

Neighbor

gene id symbol gene type direction distance location
dnajc6 dnajc6 coding downstream 10703 21342709 ~ 21378774 (-)
pde4ba pde4b,pde4ba,LOC108443455,LOC107692372,LOC107659050,LOC107591166,LOC105913193 coding downstream 127362 21112205 ~ 21262115 (-)
sgip1a sgip1 coding downstream 304714 21017926 ~ 21084763 (-)
pars2 pars2 coding downstream 390088 20996088 ~ 20999389 (-)
ttc4 ttc4,LOC107709194 coding downstream 395036 20989685 ~ 20994441 (-)
cachd1 cachd1,LOC107692379,LOC107556548 coding upstream 126826 21538999 ~ 21579079 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding upstream 222394 21634567 ~ 21756087 (-)
pgm1 pgm1,LOC107591179,LOC107704513,LOC107731639,LOC107739071,LOC107692428 coding upstream 352742 21764915 ~ 21777950 (-)
alg6 alg6,LOC107704515 coding upstream 384387 21796560 ~ 21815679 (-)
foxd3 foxd3,foxd1 coding upstream 410569 21822742 ~ 21825474 (-)
G31298 NA non-coding downstream 4201 21384409 ~ 21385276 (-)
G31094 NA non-coding downstream 323739 21062894 ~ 21065738 (-)
G31070 NA non-coding downstream 429086 20960172 ~ 20960391 (-)
G30899 NA non-coding downstream 732094 20575961 ~ 20657383 (-)
G30879 NA non-coding downstream 840840 20507382 ~ 20548637 (-)
G31481 NA non-coding upstream 120075 21532248 ~ 21532459 (-)
G31486 NA non-coding upstream 157683 21569856 ~ 21612822 (-)
G31489 NA non-coding upstream 190371 21602544 ~ 21603863 (-)
G31491 NA non-coding upstream 195223 21607396 ~ 21609167 (-)
G31492 NA non-coding upstream 203148 21615321 ~ 21615675 (-)
lepr lepr other downstream 71654 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 960152 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 1375383 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 2572279 18817127 ~ 18817198 (-)
trnag-ucc NA other downstream 2573147 18816259 ~ 18816330 (-)
raver2 raver2 other upstream 37373 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 1160259 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 1170130 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1810120 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 2203281 23615454 ~ 23632013 (-)

Expression


Co-expression Network