G31492


Basic Information

Item Value
gene id G31492
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21615321 ~ 21615675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37144
ACAATATTCAGGTCCACTGGGGAGGAACAGTTTTAAGCTtgtttcaggggctcaaagccACAGCATGACTGCTTTTTGATGTTGGGTGTTAGTATTTAATCCTGCCATGACAAAGACAACTAACTTTAATGACTGGTGATCAGAGGAACTGCCTGCATTTGCATGCCCAGTTACCCGATTTAAACTGTACAAATTAATCAAATGATAAATCTTTTTTAGGGATTACAGAGTTGCATATATTTTACATGGTTTAATATTTAACTGGTGGCAtagtagtgttgctgcctcatagctccagggtccccggtttgatcctgaccttaggttactgtctgtttagagttttgcatgttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37144 True 355 lncRNA 0.40 1 21615321 21615675

Neighbor

gene id symbol gene type direction distance location
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 36242 21538999 ~ 21579079 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding downstream 214393 21386910 ~ 21400928 (-)
dnajc6 dnajc6 coding downstream 236547 21342709 ~ 21378774 (-)
pde4ba pde4b,pde4ba,LOC108443455,LOC107692372,LOC107659050,LOC107591166,LOC105913193 coding downstream 353206 21112205 ~ 21262115 (-)
sgip1a sgip1 coding downstream 530558 21017926 ~ 21084763 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding upstream 18892 21634567 ~ 21756087 (-)
pgm1 pgm1,LOC107591179,LOC107704513,LOC107731639,LOC107739071,LOC107692428 coding upstream 149240 21764915 ~ 21777950 (-)
alg6 alg6,LOC107704515 coding upstream 180885 21796560 ~ 21815679 (-)
foxd3 foxd3,foxd1 coding upstream 207067 21822742 ~ 21825474 (-)
atg4c atg4c coding upstream 341860 21957535 ~ 21968209 (-)
G31486 NA non-coding downstream 2499 21569856 ~ 21612822 (-)
G31491 NA non-coding downstream 6154 21607396 ~ 21609167 (-)
G31489 NA non-coding downstream 11458 21602544 ~ 21603863 (-)
G31481 NA non-coding downstream 82862 21532248 ~ 21532459 (-)
G31454 NA non-coding downstream 203148 21389477 ~ 21412173 (-)
G31681 NA non-coding upstream 488523 22104198 ~ 22104411 (-)
LOC117596032 NA non-coding upstream 514750 22130425 ~ 22132698 (-)
LOC117599244 NA non-coding upstream 557676 22173351 ~ 22175740 (-)
LOC117599242 NA non-coding upstream 580919 22196594 ~ 22197668 (-)
G31742 NA non-coding upstream 608710 22224385 ~ 22226660 (-)
raver2 raver2 other downstream 83893 21449546 ~ 21531428 (-)
lepr lepr other downstream 297498 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1185996 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 1601227 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 2798123 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 956757 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 966628 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1606618 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1999779 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 4064415 25680090 ~ 25738817 (-)

Expression


Co-expression Network