G31744 (mafa,mafaa,LOC107556987,LOC107591187)


Basic Information

Item Value
gene id G31744
gene name mafa,mafaa,LOC107556987,LOC107591187
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22317683 ~ 22322046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37435
CGTTTGACACaactttttattaaactttatgaAAACAAGATTCTGAACAACATtccattcagaaacatttcagattGGACTTATTGACACGTAGAGGACATTAGATGTTTCtagaataaatatatagaaatcatgtatatacagttttgtttttttacacaaacagcCCATCTCTGAGCCAAGATCATCTCAAGCCTCCTCATGTGCTCCTTATGGAAGTAATGTCCAGAGACTGCGCTCACACTGCATTCTGCCTGAAGCAGCCTGAAGCAGGAGGATCCACTGGCTTCCTGCTGCCCTTCCCAAacaacacctcacacacacgaGGAAGATCTGACTGAAGATCTGACTGACACcccactggaaaaaaaagaatcctaCTGACTCTGTATAACTCTTAAGTACTTGATTAAGATATTGCATTTTGCATGTAGGCTACTGAGACAAGATTCTGggttgttttaaatattttgggGGTCATTTCTATTGCACATTTTTCCAACAAATTCTGAACTGCTCTTAAAGAACCATCACATCTTGTTCAGCCTATAGTACAATTTAGTGTACGTTGTATTCATGTTATAATTCTGCCTAAGAGCAATTAACTGGTCAGGAGTATATTCTGTCAAGCTAACAAAATAATGCAGCATATTTTAGAGCATGTGATAAAATCTACTTATCATCATAACTTGCATCCATTCAGCTTCAAAACAATCAGTTCAAGCATGGCTATTTTGGTGTTAGAAATATAGGATGTTTTTAAACCTGCCACATCTAGCATTAATCAAAAAATTCTTTTCTATTCGATTGGTATTCAATTGAAGcatataaaaatgcacattaaaattgtttttcagTCCTTTGGTGAATATCTATAGGATGTAGCAGCGACTGAAGTCCATGTATTGTATGTCACCTTCCATGAATCGCAGCATATCCCTAATTCCCTCTGTTCCAGTGCAGGAGGCATTGCATCTCTTCTTAGGCTAGATATTGTACATATTCGATAGAAAGAATATCGTTGATCTATTTGCATGCTTTTACATACAAACATTGCAGTTAAGAtgttgcttcttttttttttaataaacaagcaaaaaagacttggggggaaaaataattcaaaatgaaCACACTAACTGATTTCTACATATTTACACGTTGTgagaataaataagtaaaatctGGCTCAGTTCATTTCGTCTATGTGGCACTATTCTGTTActcagaacattttaaaaaagaaagaaagaaaggaaagaaaggaaattgGGGTCGGACGCATTTCCCGGGTGTAAAACCTTCCTGGACTCTTGTAGTTTTGCGGGCTGTGTTCCAATTCCTTAACTGCATCTTTACTAAAAGTCTAAAGAGgttacactacactgttcaGACTTAGAAGAGAGATAAGATGGAGAAGGAGGAAGATACAGGGCTGATTAAGggccatgctttttttttttttttttttttcatccaggTGTGTGGGAAAGATACAAAGGGCTTGGAGATTTAGTGACCATACATGTCCCGCATGCAGGGTTGGAGGGTGGATGCAGGCTGCAATGCTTCCTTCTCAGGTTCATGAGTTACTACAGAGAGTACAACCATGTCAAATAAGTCCAACAATCTATTgcttttccccccttttttcattcattcgttGGCTTGCAAATTTCCTCTTTAGTCcgatcacaaaaataaataaataagtaaataaatagcatTTCAGTTCCACCCGTCTCGCGCTTGGTGCAGTCGGATCCGTTAAGACTGTGCACAAGTCTGAGAACACAAACACCGCTGGCTGTATGAGCATGTAAGACTTTTCAGATTACAAAACGCTCTATGCTATAATACACTGAGTCAGAAAGCACGCTGTTTTGGGTCTGGAGGTGATGCATGAGTCCACGTTTAGGTCAGAGGTGAGGTCCGTGTATAGCTTCTCTATAACACACTACCTTTAAGACTTCGAGAGTTGAAAGTCTAATGCACGCGCACAAACACTCAGAATATGGTGTGTGCGTTACTGGAAATATGTTGCTTGTGGTAGTCATGTAATGATCTGAGtccttggctttttttttctgaaaagcacACAGCAAAATCCTCAgtgttaaatgaacaaatacactcaaaaaagcGTACTAAAGTGCACCTTTCCCTGTCGGGGAGGTGGTACCCTTCCCTCTTGTGCATTTAATATGCAGCTTTCACCTAGAAATGTTGACATGGTGTACCTTCATCATGTAAGGTACATATTTGGACCGTAAATAGTGCTGggagtaaagctttaaaaagcaCTTTTCTAGGTCAAAGACACACACTAAAGTTAGAACAGGTGTACCCTTGAGGgtaacaaggaaaagtacactttagtacctttttttttgcaagtgttAATTCAGCATCAGGGGATTTTGCTGTGCAGGAACTGTAgcctaaattaaaaaaaaaaaaatcacactcaGATAAAAAcgaaaagtttaaaaaaaatcagtttgtgtgggataaaaaaaaagacctgaaacaGTTCTCACATGAAGAAATCCGCCGATGAGGCTTTGCCGTGGTTGCCGCTGGACGGGTCCCGGGTGCCGCTGCTGCCGCCGGTGAAGTTCCGGCCTGCGAGCTTCTCGTACTTTTCTTTGTACATGTCCCTCTCTTTGGCCAGGCGCGCCACGTCCTGCTTGAGCTGCTCCACCTGGTTCTGCAGTGTGCACTTCTCGGTCTCGAGCATGTGCCGCTGCTGCACGCGCTTGTAGCGGCACGACTGCGCGTAGCCGCGGTTCTTCAGGGTGCGCCGCTTCTGCTTCAGGCGGATCACCTCCTCCTTGCTGAAGCCGCGCAGCTGCCGGTTCAACTCGCGCACCGTCATGCTGACGAGCTGCTCGTCCGAGAAGCGGTCTTCGAGGCGCGCGTGCGTGTGGTGGccgtggtggtggtggtgcgcGTGGTGGGCGTGCGCCGCGTGGTGGTAGCCGTTCGAGGAGGTCGACAGGTCCTCGCCGACGTACTGCTGCCCGCGGAACGTGTCGTAGGgctggtggtgatggtgatggtggtggtggtgcgcGTTGCCAATGAGCGCCTCTACCGCGTCCTCAGGGGTCAGGTTTAACGCCTCGGGGCTGATGTGGTGCTGGTAGTTAGGGATCCAGTAGAAATCCTCCAGCTGGGGCTTGCCCGAGGCGCCTTGAGtactgttgctgctgttgtttccaccattgctgctgctgctgttgttgttgttgttgttaactCCGAGGTTCTGGACGGGCTGTGCGCCGGGACTCGGTGCGCAAAAGCTTGGCGAGGAAGGCACGGAGGAGCAGGGCGTGCTGATGGGCGTGGAGGAGAGAGAGCCCGGCGGTAAGCGGTGGCAGTAGCGCTCGGCTTCAGGCGGCTCTTTTTTCACCTCAAACTTCATGAGGTCGAAGTCGTTCACATACTCGATGGCCAGGGGGCTGTTGGGCAGGTCAGCGCTCATGGCGAGGTCCGCAGCCATGTCAGTCCATGCGAGGACACGTGCAGCCTCAGAGCCAAAGCGAGGGGGAGTGAGAGGCCCTGTGCTGTCCTGTAGTGTCCTGTGCTGTCCTGTGAAGACTGTGCAGGTGGGATGTTTCACGCACAGCTCTTTAGCATCTGTTTCTCTGATTTTAGTGCGTAGAACGGCTTCTATTTATAGCAGCAGGGCTAGACGTGCAGCACACGTGTAAACTCACTTGTACACCTGCCAGGTCGCCTCTGCGCTCCTCTTGTTGACAACTTCACTCGGGTCAAATGCACGAACTCGACACTTCAGAACTGTCTTTGCTTCAGTCCTCTAAACGCGCCTTCAGGTGAAGCGTAAATTGTAGAAAATGCCAGAAACAGGTTTGCCCaacttttcttctgtttttgcacGTGCGGTTATCCCTTGTCTCCAGCTGTGCACAGCTGTCCTCACACAGGGCCAAACAGCTGGAAGTTTCCTCACTCGCGCGGAACAGTCACCAGCAGCACCGACAACTCGAACCATCAGCCACTTAATCAGTCCAGTTAAGTGGAATGGTTAGCTAAGGAGAGTCAGTAAGAAACATAGCAAGAaaacacatacataaaaaaaaaaatgaaatcacagtAAGTTCCAGCGATGGGACAGCCCACAGAAAGAGTACTGAAGTCTGTCAGCGGATATCCCGAGCTACCTGCGTGCCTTCTCCTCCGTCAGGACAGCTTTGATATactttattgttgttgtttatatatatatatatgaaacagTAGATCCCTGTAAACTGCTTGCTCTTTTCCTCCAGCGCTTTCGCTCTCTCTGCCCCACCGACTTCACA

Function

symbol description
mafa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in pronephric mesoderm; pronephric proximal convoluted tubule; pronephric proximal straight tubule; and solid lens vesicle. Human ortholog(s) of this gene implicated in Ayme-Gripp syndrome; cataract; and cataract 21 multiple types. Orthologous to human MAF (MAF bZIP transcription factor).
mafaa Enables sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in myotome; nervous system; neural tube; and somite. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human MAFA (MAF bZIP transcription factor A).

NR:

description
PREDICTED: transcription factor MafA

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37435 True 4334 lncRNA 0.46 2 22317683 22322046

Neighbor

gene id symbol gene type direction distance location
LOC117599931 LOC108271599 coding upstream 198051 22109948 ~ 22119632 (+)
kank4 kank4 coding upstream 216578 22048516 ~ 22101105 (+)
dock7 dock7 coding upstream 283593 21969974 ~ 22034090 (+)
si:dkey-148h10.5 NA coding upstream 522174 21783792 ~ 21795509 (+)
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding upstream 869600 21408754 ~ 21448083 (+)
cyldl LOC108271977 coding downstream 70782 22392828 ~ 22406479 (+)
ghrhrb ghrhrb,LOC108271568,LOC103030126,LOC108440237,LOC106560417,LOC107692395,LOC107556991,LOC107731650,LOC107704523 coding downstream 104874 22426920 ~ 22474562 (+)
akr1a1b akr1a1,LOC107731642,LOC107725198 coding downstream 230770 22552816 ~ 22560612 (+)
nasp nasp,LOC107594614,LOC107692404 coding downstream 241193 22563239 ~ 22570318 (+)
mast2 mast2 coding downstream 282935 22604981 ~ 22727448 (+)
LOC117599246 NA non-coding upstream 86668 22227215 ~ 22231015 (+)
LOC117599245 NA non-coding upstream 96157 22220382 ~ 22221526 (+)
G31704 NA non-coding upstream 129180 22182204 ~ 22188503 (+)
LOC117599240 NA non-coding upstream 151831 22164936 ~ 22165852 (+)
G31693 NA non-coding upstream 169213 22148198 ~ 22148470 (+)
G31760 NA non-coding downstream 3075 22325121 ~ 22325337 (+)
G31856 NA non-coding downstream 159358 22481404 ~ 22485447 (+)
G31878 NA non-coding downstream 182458 22504504 ~ 22514013 (+)
G31944 NA non-coding downstream 260303 22582349 ~ 22585190 (+)
G31979 NA non-coding downstream 487349 22809395 ~ 22811006 (+)
insl5a insl5 other upstream 1299816 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 1659603 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 2297457 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 2780486 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 3230472 19061097 ~ 19087211 (+)
tmem69 tmem69 other downstream 275549 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 1311560 23633606 ~ 23653555 (+)
G32684 NA other downstream 1698332 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 2330944 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 3434768 25756814 ~ 25784890 (+)

Expression


Co-expression Network