G31878


Basic Information

Item Value
gene id G31878
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22504504 ~ 22514013 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37582
TTTCTAtgtcattcattctttcatcatGAGTAACAtgcttatcctggtcagggtcgcaattgatccggagcctatcccaggatcATGTCCTTGAGTAAAGGAACACACTTTTGTATCTGAGTAGAAAGGTACACTGTGGAGGCACTGAGCAGACGTATATGCAGCCATGTGCAAGAATGGTTTAACCTTGATTGCTTGGAGCACTCAGTCAAGCAGAACTGTGCTGGCTCCTGGTCAGTTTACATTTGGCCCATCAGTTGCCAGTACTCACTGGATGCCAGGACCTTGTTTGGTGCCAATCTGTGTGTGACGTAAATGTGCCCTTGGATATTTGTTTCTCTAGATAGGAGCAGAAGGAGAACGAATGGGTCTTCATGTAAACAGTGACAGAGCTATCCTCCTCATGAGCTATCCTCCTCAAGAGGATAGTGTGTACATGAGAGTAGAGATCACACTGAACAAGGCATATGCTGCCAAAAGCAAAACATCTGAAGTGTGTGATCTGGAGAGCTGTAATTGGTGGCATTGCTCGACATAAAACACAGAATGTTTTAACAGTCTAGACTATGACAGCTCTAGGGCTATTATTCTCTGCACTCCCTGTATCACTATTCTTTCACTGAATTAAATATATCCAGGACTTACCAGAGGAAGTACAGTAAATGCCAAGAGCATGTACAAGCAGTTTTTCACAAAGGCAGCCATTTTATTCAAAGATGATGTTGTGAAATCTTCCTCTCAAATGCTGCACTGAAGACCAGAGAAGCGAGGATTCACTGgaatattgctgtggtatttcAAATCATCTTGGgatctgaaCATCGCGATGCACAGAGAGGAGGCTGCTGAATGCTCTAAGGCGAGTAGATCACCTCAGTCGCTGTCTTTGCTGGTTTCTTTTGAGATGCACAGAACAAATCGACGAGGGAAAGcgatgcaaaaaaacaaaaaaaccaaatcCTGCGCCTGGAAACTTGGTGAGTTGAGCAGTGCAGGTATTGCGGTGGCTCGAGCTGTGCGGTGGAGATGCTCCAGAACCCCCGCATACACAGCACTGAGAGAGGAAAAGCACTGAGAGGGAAAACACTGAGACCAACAGCGATGTGACTGTAATAGTGAacaagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcttgctttGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37582 True 1180 lncRNA 0.43 2 22504504 22514013

Neighbor

gene id symbol gene type direction distance location
ghrhrb ghrhrb,LOC108271568,LOC103030126,LOC108440237,LOC106560417,LOC107692395,LOC107556991,LOC107731650,LOC107704523 coding upstream 29942 22426920 ~ 22474562 (+)
cyldl LOC108271977 coding upstream 98025 22392828 ~ 22406479 (+)
LOC117599931 LOC108271599 coding upstream 384872 22109948 ~ 22119632 (+)
kank4 kank4 coding upstream 403399 22048516 ~ 22101105 (+)
dock7 dock7 coding upstream 470414 21969974 ~ 22034090 (+)
akr1a1b akr1a1,LOC107731642,LOC107725198 coding downstream 38803 22552816 ~ 22560612 (+)
nasp nasp,LOC107594614,LOC107692404 coding downstream 49226 22563239 ~ 22570318 (+)
mast2 mast2 coding downstream 90968 22604981 ~ 22727448 (+)
LOC113538154 tspan1 coding downstream 513949 23027962 ~ 23045394 (+)
orc1 orc1,LOC107725193 coding downstream 558108 23072121 ~ 23085741 (+)
G31856 NA non-coding upstream 19057 22481404 ~ 22485447 (+)
G31760 NA non-coding upstream 179167 22325121 ~ 22325337 (+)
G31744 mafa,mafaa,LOC107556987,LOC107591187 non-coding upstream 182458 22317683 ~ 22322046 (+)
LOC117599246 NA non-coding upstream 273489 22227215 ~ 22231015 (+)
LOC117599245 NA non-coding upstream 282978 22220382 ~ 22221526 (+)
G31944 NA non-coding downstream 68336 22582349 ~ 22585190 (+)
G31979 NA non-coding downstream 295382 22809395 ~ 22811006 (+)
LOC117599173 NA non-coding downstream 474108 22988121 ~ 23026499 (+)
LOC113538428 NA non-coding downstream 663919 23177932 ~ 23187094 (+)
G32310 NA non-coding downstream 941947 23455960 ~ 23459381 (+)
insl5a insl5 other upstream 1486637 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 1846424 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 2484278 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 2967307 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 3417293 19061097 ~ 19087211 (+)
tmem69 tmem69 other downstream 83582 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 1119593 23633606 ~ 23653555 (+)
G32684 NA other downstream 1506365 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 2138977 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 3242801 25756814 ~ 25784890 (+)

Expression


Co-expression Network