ccdc17 (ccdc17)


Basic Information

Item Value
gene id ccdc17
gene name ccdc17
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22572432 ~ 22581943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37658
AAAGACGTGAGTAATGCAGCTTTTGTGCAGCTTTGCCACATCATTTTGCCCAAGCACGAGGAAGCTTGTAATTTCTCACTAATGTCTTCAGGAATGAAGTCCTCTCATGCAGCTCTGGACTCAAGTATTATGGTAATGGAGAACGAAAACCAGCAGCTGGAGGAACAGATCCTCAAAttgcagatagacagagagagacgcagAG
>XM_026933625.2
TATCAGTGTCCTTTGTTAAGTTGAATTGACATGGTGACTGTAACCAACAAACAAATCCTCACCAGCTGAGAGAAATGATTGGTGAGGCTGAAAACAGTTTAGTGTAACATTACCGCCTGAATCTGTAAGCAACCTGAGTGAAAGTTGATTACTTTTTGAGAGAGTCTGAGATGGAACACTCGGGAGAGTTCAGCTGTCCTGATTGTAACATGGCGTTTCGCTCCTTTGACCTTTTGGACAAACACAAGTCCCGGTTCTGTATAGGAAGTGCCATAGGAGACCCGACAGTGTTAAGGAGAGGACGAGTGGAAATCACTGAGCCTGAAAAGGTGGATTTGAGGGCATTACGCCCCAGAAAGACAAAGACTCCTGATCTAATTCATCTGAGTGAGCAGAGAGATAAACTGCTAAGGCAGACTGAAAGACGAGAGACCCACAGAGAACCCAGCGTGGCTGACAGCCTGGCCTTTAACAGGCTCACTCATGAGTTTCATAAGCTGAGGATGTCCATTGAAGAGAGTCTGCCCAGAAGACACACAGAGGGAATGTATCCAGGCAGAAAGTGGGCTGATGGAAAGAGGcttcaggaagtgtgtgaacaccATGAGCAGAAGCTGGCTGAGATCCGGGCACACACCACCGAGCTGGAGCAACAGAGAAAGGAGATTGAACGGCAGATGGCCCTGGTTGGGAATGATGGAACGGTTCATCTGAAGGAGATGCTGCATGAGCTGAAAGAACAGGAAGAGAGAAACGAGGAGGTTCTGTACCGACTCAGCACACAGATCAATGCACTAcatggGGTAAAAGATGCTGATGTTGCGTCAGACCAGCTAGAGGACAGGAAGACACGACACTTCACCTTTGACCTCATCTCTGCTGTGGATGGCCTGCTCTCCAGCCAGATAAGAGCTTTACATCTAGCATACATACAGTCCGGTGGTTCTGATCCAGAGGTTCTGGCCCATCTGCATGACCTGCAGGCTGAGGCTCACTCCCTGGAGCAGAGCAGACCTGCAGCTGAGCACAGGACGAGAAAGAAAAGACGAATGAAGTCCTCTCATGCAGCTCTGGACTCAAGTATTATGGTAATGGAGAACGAAAACCAGCAGCTGGAGGAACAGATCCTCAAAttgcagatagacagagagagacgcagAGGAAGAGCGGCTGGTTCAGAGCTCGATCTGATCCAGAGGCACCACATCCATCAAGTTGCCAGCCTGCAGGCTGAGATCTCCAACCTGAGGAGAGAGGTGGAGAAAAGCAGGGGGAGAAAGACTCATCCTCCTGCTCCAGAATACAGTTCACAGCAGCATTCACTAATGGACAGACATGTGATTGACTCAGTGGACTCTCTTGGTCCTGCTCCTTATGATCCTGCGTCTGGATTTGTGATCTTCTATGACCTGGTCCTTGGTGTGGATGCCACGTTTAGAACGGTTCTTCTGGTAGCCAGGCTGTACTCTGGGGGGCAAGAAATCGGGCGGCCCACCCCCATGCCACCTGTCCACTGCCAGCCTGCTGGGGCTTTAGGCTATCCACTGAGAAGGCATGCTGGAAACTATGCCTTACTAGCTGTCAAGCAGCCTGTGCACAGGGTGCagccatctccatctctctactTGGTGGTGGAAGTTCAGGTTGTTGGTGGTTTTGACTTGTGTGATCAGGAGATGGGAGGCTGGTCCAAACTGCAGCTCTTTGACAGTCACAATCAGGTTCAGAGTGGATTCTGGAAACTTCCTTTCCGCTCTCTGCCTGTGAGACCGTCTCTCAGCCCGGGCCAACTCAACTCTGTACCTCAGTTGGGTAACATGGAGATTTGCCTTCGCATAGTTAATGCTCGTGATGAAGATGTACAGTCACTTGCTAAGATCGATCCTAACAATAGCAGGCAGTACAAATACCCATCAGTGGTCACCTCACACTCAAACACTGACTTGGAAGAACAAACATCCCAGCCGAAAACATTACAACTTTCACTCAATCCTTTTCTTTCATCATTGGCCCAAACTGATCATGTGGATCCTCCCCCTAAGGACAGTGGTCAGAGGTGAGAAGGAGAGATGAACCCCAAACCAATCGGATCTGGGCTGTTCTGAATATGTACATGTTGATCAATTCATTGCCATGATGTGTTCTGAGTCTCACTCATCCCAGCTGATTTGCAAATTCTAATTAGATTGACTTATAtacaccacaatgctgttgactGCTtgattctaattggtcagaaggtgttgattacttttctgtaacagcagcagtgacagttgttctggctgcaaggcaaatcacaggtttatatttgtgcttgttctaatatgttgcTGTTTGTATAGTAACACCATCCACAGGCCCTTGAcactttctgtaaggacatgtttatttaacatttttggaaggagtcttcagtgtcagtgctttatgaCAGATTGACGGCTCTACAACATTAAGTGTGCAATGTCATTGtttaatcatgaaaaaaaatggtaactattggcaaatcgctgtggtgtaagaggaataaaccacttggatgtgtgttgttattggaaaataatctgctttgata

Function

symbol description
ccdc17 Orthologous to human CCDC17 (coiled-coil domain containing 17).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37658 False 205 lncRNA 0.45 1 22577631 22577835
XM_026933625.2 True 2578 mRNA 0.47 14 22572432 22581943

Neighbor

gene id symbol gene type direction distance location
LOC113538473 NA coding downstream 20133 22547254 ~ 22552299 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding downstream 58374 22484092 ~ 22514058 (-)
LOC117599264 zc3h3 coding downstream 179639 22390253 ~ 22392793 (-)
zc3h3 zc3h3 coding downstream 181877 22327455 ~ 22390555 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding downstream 250382 22319135 ~ 22322050 (-)
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding upstream 191183 22773126 ~ 22964855 (-)
pomgnt1 pomgnt1 coding upstream 466643 23048586 ~ 23062081 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 481584 23063527 ~ 23071529 (-)
mpl mpl coding upstream 504664 23086607 ~ 23095386 (-)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 517010 23098953 ~ 23116279 (-)
G31934 NA non-coding downstream 3596 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 11824 22538323 ~ 22560608 (-)
G31755 NA non-coding downstream 256426 22315806 ~ 22316006 (-)
G31742 NA non-coding downstream 345772 22224385 ~ 22226660 (-)
LOC117599242 NA non-coding downstream 374764 22196594 ~ 22197668 (-)
G32157 NA non-coding upstream 129270 22711213 ~ 22785690 (-)
LOC113538262 NA non-coding upstream 408504 22990447 ~ 22995189 (-)
G32244 NA non-coding upstream 460588 23042531 ~ 23042762 (-)
G32629 NA non-coding upstream 1096839 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 1438182 24020125 ~ 24020779 (-)
raver2 raver2 other downstream 1041004 21449546 ~ 21531428 (-)
lepr lepr other downstream 1254609 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2143107 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2558338 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3755234 18817127 ~ 18817198 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 360 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 640350 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1033511 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3098147 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 3318787 25900730 ~ 25907994 (-)

Expression


Co-expression Network