gpbp1l1 (gpbp1l1,LOC107731630,LOC107551044,LOC107725200)


Basic Information

Item Value
gene id gpbp1l1
gene name gpbp1l1,LOC107731630,LOC107551044,LOC107725200
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22582303 ~ 22593861 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37680
ttttatttttatttttttattttttttggtagtACAGTTTGGCAGCTAAGATCTTAGCCCTGCTCTTGTGTTTGACTCAAACTGTACTGGTTCCATTGTTCTCACTCTGCTTTTTCAACTAAATGTGAGCAAGCTTGTGAATGTACGATCAAAGTGACATGTTGGATTTGATATGTAGCTTACATGAGAGTTTATTGCCTAGCATTTGTGAGTGAAGAGAAGTTCATTATGAAAAAGCAGTAATAGAGGAAAGCGTCACTGTCCAATGGGTTTTCTTTGGATAAACTCAccgtcaaacacacactgtctcagtgCAATTTCATTTGATGGACAAAATTAGTCTGATTTTGGACTTGCAGAATTTCAAATGGTTCTTCTTGTTCTATGAGAAGTTCAATCCCAAAGAATTATAGTTAATGTTCTCCTGATGCCAGAATGTAGAGATTAAGCATTTTACAAGTCACCCATGATTCATCAATTCCAGTGGATACTgttgcaggaaaaaaatcaataaatgaatagaGACTTAAAGGTAATTAGAGGAAAATGCAGTCTTGTCAAGCACATTTGAATCCACTGGCAAGAAATTACTATGTAGTGAATGATTTCTAATTGGCTTGTTAGAAAAGAGCGTTTAGCCTGTAGAGCTTTCCTCTTGGCTCCTACTTGTAAAAGcaagttctgttctgttcacagATGTGTTTACGAGAACTCTAGATGCTCTTCTGTCCGTGCAGCTGATAGAACGGTAGATGCCCTTCTGCAAAAGTTCTGTATTTCATGAGGGACTGCTGGTGGAAATTATGCATCtccttttttttgtaccttgttTTTGCTGATAGGGTATAAAAAGGCTTTATTACAGAtttaagtttctttttttatgttggtACAGCTGTAAAAAATCCCacataaatagtttttttttcttcttttgtttgcaTTATGTTGTTCCTGCAGCCTTGATATTCAG
>XM_026933319.2
TGTGACGCGGCCGCGCGCTCTGTGATCGATTAGCAGGTCTGTTGGAGAAGTAGACAGGAACAGGACAGACGGAGCGGAGTGTggcttaaaaacacaaacagaaaagaacAAGCGCAAACACGAACAGCGGATAAAACTCGTCGGCTGCCTTGGAGAAGAAGCACATCTGCGTCTTTGTTTAACTTATTTGGCTAGACAACGGATCTgaagAGTTGATCTGCAGAGTggagaagtgaagtgaagcagGAGTCTACTGGATATTTCCTGAATAACACACATCCTACATGAGCTACAattaaacttttgcactctttttgtcttttactaCGTTTGGATTTATATAATCACGTCGTCTGTGAATTGCTGATGCCCAGTGCACTCTGTGTAACAACACCTCTGTTGAAAAGCTGCAGTCTCCAGTATCTGTTCAAGCGTGCTCTGAATTGATGAACTGGAAAATCCACAGGTTTGTGAAGGATCAGATCATACTTCGTTTCAGATACTCTGGCTCTCTGACGTGATACTGGCCCACTAGTGACAAAACCTGAAGATGATGTCAAGTTTTACTTTCACTCTACTGTCATCTGATATGGCCCAAAGTACGAGCTGCTGAAAACTAAAGCAATGCCCATGACTTCGTAGCACCAGGCACCCACAGCTTTTGTGATGTGACGCATCGGCCCCCTTTGTTTTTGCCTTGATCTCGCACCCTCGCTGTTTTAATGAGGTGAACATATTTGGCTCGTGACTTTCTGCAACAAAGCATTGTGTGGTGTAGCCCCAcgctctttcttcttttcctgtGTGTGCATCCTCAGCTTACGATGAGTTTGTGAAAGGAGTTTCTGAGCTTCAAAGCAAGCACGACGTGCTGCTTTTTACAGCCTTCCAGATATAAAGACTGGTCCaaaactcctgggattttttcTTCCACgtcattttcactttattttgtcACTCTGAATGCACTCTGTGATGAGATGAATTGAGGTTGTCCTGGAGAGTCACTCAGACATCACAGCTTGCTTTCTGCATCTTGTACTTCCACCACCATTGATCAAAAGCGCTCCATCTTGACCACTGACCACTACACCCATCTTCCATTTTAACATTACGTGGGACATCCAGACACCAAAACGAGGTCACCTCACTCACTGCACCATCCTGGAGGCTGGAATTTGTTTGTGGCGAGCATCTGTTGTCCTGTGGCTGCTGTTCGTTTGCACACCTGAAGCTGTGTGAGTGGACTGGTGTGAGCGAGTGCAGGGACAAAGCCAAGCACAGGGCCGCTGGACTACAGAGCTCACGACTCTGGGTTCAGGCCATGAGGTTTCATGCCTCGATCCACTGACGGGAGACACTGGACCTAAATGGCGCAGCATGACTTTGTTCCTGCCTGGCTTAACTTCTCCACGCCTCAGCCCGCCAAGTCCCCTGCAGCCCCTCTTGAGAAACATGGTGAGCACTGTGCTCGTGGAGATGGCCGGCCGGGAGTGAGCCGCCGTAGACACAACTCCTCTGACGGCTTCTTCAACAACGATCTGCTCCGCGCTCCGTCAGGTGATGGGTGGCTCCAGCCGTCTCTGCTGAGGCATGACTCTGTGGACTCTGGTGTCGCTAAGGGCAATCAGGGAGGTTTGGGTAGTGGACATGGCTGGAAGGAGACCCCCAGCTGGCATGGGGCCCCGCGCGGTCAAGAGGGCCCTCACCATCACCACGGGCGCCATGCCAAACGCGGAGGAGGAGACAGGGACAGGCAGGGTGGCCATCGGCAGCGCAACGGCAACTTCCATCCACGCAAAGGCGCTCCCTTCCAGGACCGTTACTCTGACGAGGAGCGCAATGATGACAAGCTTAAGTTTGTTGAAGAGGATTTTCCCTCCCTGAATCCAGAGACGACTGGAAAGCCAGTGAGTCAGGCTCGCGCTGTGGGAACTCCAGCAGGCGTGTGGGAGAATCCTCCCAGCGCTAAACAGGCTGTGTCTAAGATGCTGGTCATTAAGAAAGTGTCTAAGGAGGACCCCAGTGCTGCATTCTCCGCTGGTTTTGCCAGTGCCGGCCCTCTGCCTGCCAACGGCTCCAAAGTCCCCATCACTGGACCCAGTGTGTACAAGAACCTGGTTCCCAAACCTGCTACTGCCCCAACTAAGACTGGCCCTTGGAAACCCAATGGAAGGGAAACTAAAGTGGGTTTGCATTTCTCTGGTCGGGATTCAGCCTTCACCAGCCCTGTGTCTGTGACCAAACCTCTGACCCCAGTCAGCGCACCACCCCATGGCACTCCAAAAGAGCCACCATCCAGCACTACTCCTCCAATAGACATCACTCCTCCTCGGCTGAAGCTGATGCGGCGTGGCACAGACCGTAAGAGCGAGTTCCTGCGTGGACTGAAGGACGAGAGGAATGGAGAGATGAGCAGCTGCCACAGCCCTGGAGCTCCAACAGAGggAGACAGTGGTACTCCTGAGCCTAAAGAGTACGGGGAAAGCCATGAGAACGgcatgtctcactctcttaGTGACTCTGACACTGAGCACCTATCCAGCTCACTGGAGGCTGAACACCGGCTGCTTAAAGCAATGGGCTGGCAGGAGTATCCCGAGAATGATGACTTCCAGCCTCTCACAGAGGACGAACTCAAAGAGTTCCAGGCTAAGACCGAGCAGATGAAGAAGAACGGGCTGGGGCGTAACGGTGTGCTCCTGAAGCCGCGCGCTGTGGCGCTGCTGACTTGGAGGAACTCCACCAACACCGGCCTGGATGAAGGCTCCGAGTCTGAGACCAGCAGTAGCAGCCAGACTTCGGACGACGAGGACACCTAACGTGGCTTTAAATCTCCCCTTGTCCTCTTCCTCCATCACTCTcgctcactttctctctgtctctcttacatCATACCTTACATTTCAAGcgaaaagaagaaaatggttGAATATATTGTTTCCATGGACAAGAGCCATCAGTCATATCCCAGTGAGAGAGAACACTGAAATGACATGTCATGGgcaatttgtttttctttcttccttttctctcctgttctcatgtttttccctttttctcccCAGACTAGAAATGTCTATctaaagccacacacacacacacacacacatcccccaccagatgttttttgtttttgcttggGAAAAAAGACTAACTCATAATAACACCAATTATAACCGTGACTTAACGTGGAATATGACTTCATCtgaatgttatataaaatgGCTTTGACACCTTtctcaaatatatttttttttcctttttgcgAAAACAATTCGTAGCATTAGTGTTAAGATGAAACAATCATTGTGAGCCACTAACAGCGGCGTTGCTCCCAGTCCCTCATAGAAATGAACACAAGCCAGCAAGAAAGCACTAAAACGAAAGCCCAacagaaatctttttttatttttattttttttggtagtACAGTTTGGCAGCTAAGATCTTAGCCCTGCTCTTGTGTTTGACTCAAACTGTACTGGTTCCATTGTTCTCACTCTGCTTTTTCAACTAAATGTGAGCAAGCTTGTGAATGTACGATCAAAGTGACATGTTGGATTTGATATGTAGCTTACATGAGAGTTTATTGCCTAGCATTTGTGAGTGAAGAGAAGTTCATTATGAAAAAGCAGTAATAGAGGAAAGCGTCACTGTCCAATGGGTTTTCTTTGGATAAACTCAccgtcaaacacacactgtctcagtgCAATTTCATTTGATGGACAAAATTAGTCTGATTTTGGACTTGCAGAATTTCAAATGGTTCTTCTTGTTCTATGAGAAGTTCAATCCCAAAGAATTATAGTTAATGTTCTCCTGATGCCAGAATGTAGAGATTAAGCATTTTACAAGTCACCCATGATTCATCAATTCCAGTGGATACTgttgcaggaaaaaaatcaataaatgaatagaGACTTAAAGGTAATTAGAGGAAAATGCAGTCTTGTCAAGCACATTTGAATCCACTGGCAAGAAATTACTATGTAGTGAATGATTTCTAATTGGCTTGTTAGAAAAGAGCGTTTAGCCTGTAGAGCTTTCCTCTTGGCTCCTACTTGTAAAAGcaagttctgttctgttcacagATGTGTTTACGAGAACTCTAGATGCTCTTCTGTCCGTGCAGCTGATAGAACGGTAGATGCCCTTCTGCAAAAGTTCTGTATTTCATGAGGGACTGCTGGTGGAAATTATGCATCtccttttttttgtaccttgttTTTGCTGATAGGGTATAAAAAGGCTTTATTACAGAtttaagtttctttttttatgttggtACAGCTGTAAAAAATCCCacataaatagtttttttttcttcttttgtttgcaTTATGTTGTTCCTGCAGCCTTGATATTCAGGGTGGATTGTaaaaaatataagaataaaaattgTGAGTTTTGGAA

Function

symbol description
gpbp1l1 Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human GPBP1L1 (GC-rich promoter binding protein 1 like 1).

NR:

description
PREDICTED: vasculin-like protein 1

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37680 False 973 lncRNA 0.36 2 22582348 22585190
XM_026933319.2 True 4416 mRNA 0.47 12 22582303 22593861

Neighbor

gene id symbol gene type direction distance location
LOC113538473 NA coding downstream 30004 22547254 ~ 22552299 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding downstream 68245 22484092 ~ 22514058 (-)
LOC117599264 zc3h3 coding downstream 189510 22390253 ~ 22392793 (-)
zc3h3 zc3h3 coding downstream 191748 22327455 ~ 22390555 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding downstream 260253 22319135 ~ 22322050 (-)
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding upstream 179265 22773126 ~ 22964855 (-)
pomgnt1 pomgnt1 coding upstream 454725 23048586 ~ 23062081 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 469666 23063527 ~ 23071529 (-)
mpl mpl coding upstream 492746 23086607 ~ 23095386 (-)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 505092 23098953 ~ 23116279 (-)
G31934 NA non-coding downstream 13467 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 21695 22538323 ~ 22560608 (-)
G31755 NA non-coding downstream 266297 22315806 ~ 22316006 (-)
G31742 NA non-coding downstream 355643 22224385 ~ 22226660 (-)
LOC117599242 NA non-coding downstream 384635 22196594 ~ 22197668 (-)
G32157 NA non-coding upstream 117352 22711213 ~ 22785690 (-)
LOC113538262 NA non-coding upstream 396586 22990447 ~ 22995189 (-)
G32244 NA non-coding upstream 448670 23042531 ~ 23042762 (-)
G32629 NA non-coding upstream 1084921 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 1426264 24020125 ~ 24020779 (-)
ccdc17 ccdc17 other downstream 360 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 1050875 21449546 ~ 21531428 (-)
lepr lepr other downstream 1264480 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2152978 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2568209 20003359 ~ 20014094 (-)
dmrt2b LOC108271504 other upstream 628432 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1021593 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3086229 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 3306869 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 3487288 26081149 ~ 26105675 (-)

Expression


Co-expression Network