G31979


Basic Information

Item Value
gene id G31979
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22809395 ~ 22811006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37722
cgctgcactgtaactcaccgtgcccattgtcttgttttgatagtttttgtactgtcttgtgccgtCTGCACATGtctgcactgtgcactttacataaatatatataatgtctactgtagttctgtgtttgtcctatgtagcaccttggtcctggaggaacgttgtttcgttttaCTGTGTACttactagctgtatatggttgaaatgacaataaagccacttgacttgacttgattagACTGATGTTGTGGAATCCTGTGTAGCGCATCAGTCCGGGGACAGTTAGTTGTggtatatacagatatatatatatatatacacactgcctggccaaaaaaaaagtcgcacaatctaatattttgttgcactgcatttagctttgattatggcacgcattcgtcctggcattgtttcaacaaccttatgcaacttcacaacatttatttccatccagagttgcattaatttttggctgagatcttgcattgaggagaggaaagtcggaccactccgtaaagtcttctccagcacatcccaaacactttcaatggggttaaagtcacgactctgtggtggccaattcatgtgtgaaaatgattcctcttGCTCCCTGAAcaactctttcacaagttaagcctgatgaatcttagcattttcatcctggtatatgcctgtgccgtcagggaagaaaaagtccattgacgggataacctggtcattcagtacattcaggtgctcagctgaatTCAgacctgaccagctgatgcaaccccagatcataacactgcctccagaggcttgtacagtaggcactatgcatgacgggtgaatcacttcatccatttcccttcttaccctgacacgcccattgctttggaatagggtacatctgattttatcagaccacatgacctttttccattgctccacagtccagtctttatgctccctagcaaattgaagtcatttttcccgattagcctcactaacaaatggctttcttgtggccacacagctgtttagtccaaatcctgtaagttctcgtCACATTGTacgtgtggaaatgctcttactttcactattaaacatagccgtgagttcccctgtcgatttttttacagtgtgacatcaccaagattTTTAAAGATCTCCAATCACGATCAAGATTTTTTGATCgtgactacatttctgctgtaaagttgacgggTCACCaatatccttccaggctttaataatgcactggacatttcataacccagatacgtaatctgccatgggtgtttaagaaatgagaagctacacactgcatcagttaaggttaaaagaattgttgccagctgaaacatattaatcactgcagtaatgatccaatcataggctcttaagtatttgcttatttaaacccaaacagcgaccttttttttggccaggcagtatatatatatatatatatatttgtaaaagtcaaagaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37722 True 1474 lncRNA 0.41 3 22809395 22811006

Neighbor

gene id symbol gene type direction distance location
mast2 mast2 coding upstream 81947 22604981 ~ 22727448 (+)
nasp nasp,LOC107594614,LOC107692404 coding upstream 239077 22563239 ~ 22570318 (+)
akr1a1b akr1a1,LOC107731642,LOC107725198 coding upstream 248783 22552816 ~ 22560612 (+)
ghrhrb ghrhrb,LOC108271568,LOC103030126,LOC108440237,LOC106560417,LOC107692395,LOC107556991,LOC107731650,LOC107704523 coding upstream 334833 22426920 ~ 22474562 (+)
cyldl LOC108271977 coding upstream 402916 22392828 ~ 22406479 (+)
LOC113538154 tspan1 coding downstream 216956 23027962 ~ 23045394 (+)
orc1 orc1,LOC107725193 coding downstream 261115 23072121 ~ 23085741 (+)
c2h1orf210 c11h1orf210 coding downstream 323155 23134161 ~ 23139196 (+)
ap1m3 ap1m3,LOC108271949,LOC108441657,LOC107724146,LOC107684323 coding downstream 330005 23141011 ~ 23163655 (+)
lrp8 lrp8,LOC108272272,LOC107758363,LOC108238419 coding downstream 466937 23277943 ~ 23453663 (+)
G31944 NA non-coding upstream 224205 22582349 ~ 22585190 (+)
G31878 NA non-coding upstream 295382 22504504 ~ 22514013 (+)
G31856 NA non-coding upstream 323948 22481404 ~ 22485447 (+)
G31760 NA non-coding upstream 484058 22325121 ~ 22325337 (+)
G31744 mafa,mafaa,LOC107556987,LOC107591187 non-coding upstream 487349 22317683 ~ 22322046 (+)
LOC117599173 NA non-coding downstream 177115 22988121 ~ 23026499 (+)
LOC113538428 NA non-coding downstream 366926 23177932 ~ 23187094 (+)
G32310 NA non-coding downstream 644954 23455960 ~ 23459381 (+)
G32466 serbp1a,serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366,LOC107384419 non-coding downstream 705398 23516404 ~ 23560789 (+)
LOC113538216 NA non-coding downstream 749716 23560722 ~ 23562633 (+)
tmem69 tmem69 other upstream 205959 22597595 ~ 22603436 (+)
insl5a insl5 other upstream 1791528 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 2151315 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 2789169 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 3272198 19534345 ~ 19537197 (+)
uhmk1 uhmk1,LOC107692420 other downstream 822600 23633606 ~ 23653555 (+)
G32684 NA other downstream 1209372 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 1841984 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 2945808 25756814 ~ 25784890 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 3454491 26265497 ~ 26408396 (+)

Expression


Co-expression Network