G32782


Basic Information

Item Value
gene id G32782
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24259993 ~ 24260377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU38656
taacaacccaaaacatactgtgaaagcagcccaagagcttggaaattaaatgttcttaaatggccgagtcagtcacctgacctcaacccaactgagctgcttttcacttactgaagacaaatctgaaggcagaatgacccacaaacaagcagcaactgaagatggctgcagtaaggacctggcaaatcatctcaagggaggaaactcagcatttggtgatgtccatggggtccagacttcaggtagtcattgactgcaaaggatttacctccaagtaataaaaataatcctaatatttatgattatattagtttgtcccattacttttgagcctgtgaaaatggaggaactctgtaaaaaaatggctgtaattcctaaacggtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38656 True 385 lncRNA 0.41 1 24259993 24260377

Neighbor

gene id symbol gene type direction distance location
rgs4 LOC108272266 coding upstream 420403 23836334 ~ 23839590 (+)
il12rb2 LOC108271892 coding upstream 708049 23533178 ~ 23551944 (+)
il23r LOC108272282 coding upstream 729609 23495748 ~ 23530384 (+)
trnaf-gaa_16 NA coding upstream 783970 23475951 ~ 23476023 (+)
lrp8 lrp8,LOC108272272,LOC107758363,LOC108238419 coding upstream 806330 23277943 ~ 23453663 (+)
LOC113538433 LOC108271906 coding downstream 298556 24558933 ~ 24567675 (+)
LOC113538193 NA coding downstream 308198 24568575 ~ 24570619 (+)
rtn4a LOC108271908 coding downstream 315304 24575681 ~ 24588531 (+)
LOC113538142 LOC108271661 coding downstream 1529587 25789964 ~ 25793678 (+)
LOC113538280 LOC108273248,LOC108436444,LOC103352837,LOC104926284 coding downstream 1560507 25820884 ~ 25840241 (+)
G32662 NA non-coding upstream 315533 23944239 ~ 23944460 (+)
LOC113538279 NA non-coding upstream 593060 23662954 ~ 23666933 (+)
G32502 NA non-coding upstream 644928 23614863 ~ 23615065 (+)
LOC113538216 NA non-coding upstream 697360 23560722 ~ 23562633 (+)
G32466 serbp1a,serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366,LOC107384419 non-coding upstream 699204 23516404 ~ 23560789 (+)
G32795 brinp3a.2,LOC108440126,LOC108271609,LOC107711116,LOC107732449 non-coding downstream 73822 24334199 ~ 24334455 (+)
LOC117596090 NA non-coding downstream 388641 24649018 ~ 24650283 (+)
LOC117596060 NA non-coding downstream 503050 24763427 ~ 24764691 (+)
G33148 NA non-coding downstream 987469 25247846 ~ 25250585 (+)
G33192 NA non-coding downstream 1312405 25572782 ~ 25573315 (+)
G32684 NA other upstream 238957 24020378 ~ 24021036 (+)
uhmk1 uhmk1,LOC107692420 other upstream 606438 23633606 ~ 23653555 (+)
tmem69 tmem69 other upstream 1656557 22597595 ~ 22603436 (+)
insl5a insl5 other upstream 3242126 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 3601913 20536973 ~ 20658080 (+)
LOC117598985 NA other downstream 392613 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 1496437 25756814 ~ 25784890 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 2005120 26265497 ~ 26408396 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 2353273 26613650 ~ 26649387 (+)
adam23a adam23,LOC107705602,LOC107748557,LOC107688856,LOC107660086 other downstream 3509419 27769796 ~ 27787602 (+)

Expression


Co-expression Network