LOC117599130


Basic Information

Item Value
gene id LOC117599130
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25658315 ~ 25661964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU39435
tttgtttatattttatgcaGCTTTGCATACAAATGGTaagatttctgttttattaattcatttttgtgtcTCCTCTTTTTCATGAGTCATTACTGGATGGAGTCGTTACATTTTATCCTGAGACCATGATCACCCAACATCATGGACCTCCAGACCATCAGACATCAATATCACCACCTACATGGACCTCCAAACAGCCGAGTACTTGACCTTACGCTTATCATTCCTTGTTCCATGGAGAACACCATTGCTTATTCTCAGCGCTAAGAGCTTTAGTCCTTCTTTTTGTGATCAAGGATTTGCCATAGACCCCATTTCCTCCCAGTTTGTTCGTTTGCGAGCTCTCCCATATCACACGACACACAAAGCCACCACATGGcgcagggcagtgtaacacactcagaggagagCGCTGTCTGCACTCTTCCACATCCACGacctcacagacacccacgattggctgctgtcgctgtgattgacgggAGAGAGAGCAccaatttttgtttgttggacTCGGATAgctgaacacttttctgttgtgacACTCAGGAGCAGCATGGacttgtttttattcctcttccagAAGCTGAGAGAACTTTTATAAATATACCCACGtattaaccctcagctgctcatcTCCTCCTCGTCTCAACTGAAAATCGCTTTGGATATAGGTATCTGCTAATTAAACGAGTGTAAGCGTGAAGAGGAGTGCATCCTTGCCTTTATTGAGAGTCTGTTTTATGCTTTATTAGGAGTGCTTCTGAGAACAACCCAAt
>XR_004579559.1
aaaaaaaaaaaaaaaatataaaacggCTGAAAATATAAAGACCATTTCAAAacaaccccccacccccaatcctcacaaaaagagcaaaattCCTATTTTCCTGGCCCCAAAAATATGATGGTCATTACTGGATGGAGTCGTTACATTTTATCCTGAGACCATGATCACCCAACATCATGGACCTCCAGACCATCAGACATCAATATCACCACCTACATGGACCTCCAAACAGCCGAGTACTTGACCTTACGCTTATCATTCCTTGTTCCATGGAGAACACCATTGCTTATTCTCAGCGCTAAGAGCTTTAGTCCTTCTTTTTGTGATCAAGGATTTGCCATAGACCCCATTTCCTCCCAGTTTGTTCGTTTGCGAGCTCTCCCATATCACACGACACACAAAGCCACCACATGGcgcagggcagtgtaacacactcagaggagagCGCTGTCTGCACTCTTCCACATCCACGacctcacagacacccacgattggctgctgtcgctgtgattgacgggAGAGAGAGCAccaatttttgtttgttggacTCGGATAgctgaacacttttctgttgtgacACTCAGGAGCAGCATGGacttgtttttattcctcttccagAAGCTGAGAGAACTTTTATAAATATACCCACGtattaaccctcagctgctcatcTCCTCCTCGTCTCAACTGAAAATCGCTTTGGATATAGGTATCTGCTAATTAAACGAGTGTAAGCGTGAAGAGGAGTGCATCCTTGCCTTTATTGAGAGTCTGTTTTATGCTTTATTAGGAGTGCTTCTGAGAACAACCCAAtaggagcattttttttttttttttttgaaatttgtATCGTAAAATCTATTATATATCTTCCAAAACCTTGCTAGCTTGTTCGTGATTTGATTAAGTTGTTGGATCGCTACGTGTCATAGTGAAATGGACAGAAGTCTAATCAATTTGGTTTGTAATCAAATACGTCGCATGTATGTATGTTGGtttaatgtggttttttttgttgttgtttttttaaatctcgcAACTTTCTTACATCACATTTAACAGCAGCTAAAGACCAAATACCgaataacaaacacaaacgTAAATCTttcacataaacaaaaacatttttaaaatttatttaaaatagcaCAATTGGTTACAAGCGGCAGGAATTCGAGTACGTGATGAGAACTCGCATATTTTCACCACCGGGTACGCAAGCTGTCGAAATGAAACGTCAAAAATCCAGAATATTCTTCAGACAGGAAGCACAGCTGCGCATTCAGTCTTTCAGAAGCTCAATAAACTGTGAAATAATTTCTAAAAtctaatttattaaacatttttgtgatgATGAAGTCAATCACAGCGGCTGCTGACGACAAAATTATCATTTCAGGAtactttaagacattttttttgctttatacaGGAGCAAAAAGTaatctaaaaatgtatttaaaaaaataaataaataaataaaataataaataaaaaaatatttttttgaaatatttaaaaaataatctgagGGAAACTGAGTTTGGGgataacactgaaaaggaggaaaaattacttttatttatttatttatttattagtaattaGGTGTAATTTAATGTTTTCCAATTTAAAGATTCCATACAAAATTTTTAGCCAATCTTCTGCCTCTAATCCGAGTTAGTaactgtttgtttaaaaaaaaaaaatcatgttagaTTTTTTATTTGGGGTTGAGATGCATGTAAAAGAGAAAGCTTTCAGTTTCAGGAAGGTCTGTAGTGTTTAAAACTATATAAAGTAGAAAATCTCAAAGTCTATGAGTGTTCATGAGAACACAAATGATAAAAAAGTGAATTATGAACATCTCTGAAACATCTCCATCTAAGTGCTCTTTAAGGGCAAGCTAGGAGCAGTGCTAAGAGCAGTGCTCAGTATTCTgggctttataaataaacttgaccattttcttttcacagaCTTTTCTCTTGCTTATTTGTCATGGTCAGTTGGCATTCatataaggaaatgtttatgaaTGGTCATGTTTGCTGGCTGGTGGTTCTTTTCTatcccacaattccttgcggtcACATTTGCATGGCGCAGGAGAGGAGTGATAACCCAATCAGGGCAGCGGTGTGGCTCTCTCACCCGGGAGCCTGTCACCTAAAGTCAGCTAATTGTGAGGAATTCGGTTTGGTCTCTGCTAAAGGCCTGCTCTGTTCCAAATTTAGGTTGTCTGGCTCAGCGAGGGGCCTTTTAAGTGGTCACTAGGCCCACGCAGGACGTGCTGctttgtgtgcgcgtgtgtgggACATTCTTCATTTTTTCAGCCGACCTTTGACCCTAACCTGGGGTTCTAACAAGCGTTGCTGGCTCAGACGTGCTGCAGATTAGCACATTGTGAGGAAAAGTGATGGatattacattatgttttttaaacatggctGTATTTCCCAGCGAGCCCAGTCCTGTCTCAGCTGGAGCTTCCCATAATGCTGTGATGGATTTGTTAAGCGCTGGAGCTCAGTGTGAGCTTTGCACGCAGGGGTCAGATGAGTTTCCGTCTAACTCGTTTAGCTTGGAAAATATTGGCTAACgaggttagtgtgtgttgcgGGGTGTCGGATAACGCGTTTATGGCGCGCACCTCGTTTGTTTAGGACTCTTTTCATTTCTAATTTGCGTCAGCAAGATGAATGGACGACACTCTTAACGAGCAGAGCGAATGATGTGTGACTGTGCAGGTTGTGATCTCTGAGCGTAATTGATCGTGTTTTCATTGCAGTGGTGTTCATGGACACGAGTGAGGACGTGTTTGAATCCCAGGAGCGCAACATGTCGGTGGTGGATTTGCTAATACAGCAGGGAGGATCGAGTCTCTTCTCATTGTAGACCAGACAATATACACAACTACATGTGGGTATAAtttccactcttttttttttagccacacAATTTTGCCACCACTTTGTAAAAATATAGTTTGTTAGTATCCTGTCTACACCACCTGTCTAAAAAGTGTGTCAATGTGTCTTCGCTCATTGTTCTCCATTCTGTCGACACAGGATGcaaccctgaagtgttttattcctcttacaccacagaaatgtatcattttattattgatGATAAGTTTTTATGAGTTTATATTACAGGTTGTGTAATATCAGTGaagaaagttagttcctgttatcacttgcgttatTGCAGCTATGaagcctctctgttttttcttctcttgaaATGAGGAAAGTACAAAATGCATCTTATCATGTTACCAAAACATTCCTAAGACTTGCGTTGGAAAACATAGAGCTTTTTatctctgattgttacaaagtgctgacactggagacttcttccataaaagTTGAATAAATAACTCTTTACAGGAAACCTCACCGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39435 False 779 lncRNA 0.44 1 25660913 25661691
XR_004579559.1 True 3412 lncRNA 0.39 2 25658315 25661964

Neighbor

gene id symbol gene type direction distance location
obi1 rnf219 coding downstream 77773 25570021 ~ 25580542 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding downstream 94226 25560790 ~ 25564089 (-)
LOC113538330 pcdh9,LOC107582331 coding downstream 488055 24968550 ~ 25170260 (-)
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 1276822 24330165 ~ 24381493 (-)
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding downstream 1528289 24077383 ~ 24130026 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding upstream 36 25662000 ~ 25674496 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding upstream 83419 25745383 ~ 25755348 (-)
trim25l LOC108271643 coding upstream 133262 25795226 ~ 25813178 (-)
LOC113538391 NA coding upstream 149922 25811886 ~ 25817786 (-)
gpr180 gpr180 coding upstream 398491 26060455 ~ 26068892 (-)
G33166 NA non-coding downstream 226347 25431758 ~ 25431968 (-)
LOC113538494 NA non-coding downstream 417962 25206722 ~ 25240353 (-)
G32923 NA non-coding downstream 833881 24824235 ~ 24824434 (-)
LOC117599074 NA non-coding downstream 858890 24794547 ~ 24799425 (-)
G32901 NA non-coding downstream 890305 24767808 ~ 24768010 (-)
G33508 NA non-coding upstream 48267 25710231 ~ 25784880 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding upstream 175334 25837298 ~ 25843332 (-)
G33621 NA non-coding upstream 415411 26077375 ~ 26077901 (-)
G33617 NA non-coding upstream 427414 26089378 ~ 26109660 (-)
G33645 psmb3,LOC107586359,LOC107688824,LOC102792592 non-coding upstream 560499 26222463 ~ 26227188 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 2026302 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 2432767 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 3064454 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 3076372 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 4126887 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 18126 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 238766 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 419185 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 968865 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 977869 26639833 ~ 26649379 (-)

Expression


Co-expression Network