XLOC_000055 (slitrk6)


Basic Information

Item Value
gene id XLOC_000055
gene name slitrk6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4101741 ~ 4154332 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000112
GGAGGGCTTTTCCGTGCCAAAGGAAGCCCTTTTGAGAAGTCCAGGCGTCCTATTTTGTGCTGCAAAACTGGGTGGTTTTGTTTGATCCACAAAGCACTGATAACTTGGCCAAGTGGAGCTACGGAGACTCACAGCGCTGCGTAATTTGGATgcacagaagaaataaaaaaaaaatgctggccagGATTGTTTTCATTTGCTCCTTCTTTGCTGGTGCTAGTTTTGGAGATACTGAGTCCAAGGCGTCATACGGCGGAGCTTGCAAATCTTTGTGCACCTGTGAGGAGAAAGATGGAGTACTGTACGTGAACTGTGAGGAGAGAAACATAAGCAGAATCTCGGATGTGAAAGTACCATCAGATGTACCTTTTCATCTAAATTTATACAAAAATGACTTGGTGGAGTTACTTGCAGAGGACGTGGAGGCTTTCAAGAATGCCATTACCTTACATCTCGGTGCGAACAGCATACAGGAGCTCGAACCTGGCGTGTTTAGTGCACTGGGATCCCTGAAAAAGCTGCACATAAACAGCAATTTCCTGGTTATGTTGAAGGAGGACACATTCCAGGGGTTGGTAAATTTGGAGTACCTTCAGGCTGACACCAACTTCATCCGAGTGGTTGAGCCTGGGGCTTTCAGCAAGCTCATCCGTCTCAAAGTTCTGATCCTCAATGACAACTCAATCGACTTCCTTCCGAGCAACATTTTCCGCTTTGTGCCTCTGACACATTTGGATCTGCGCGGGAATAAGCTGCAGACACTGCCATACGTAGGTTTCCTGGAGCATATCGGTCGTATCATGGAGCTCCTGTTGGAGGATAACGACTGGGTGTGCAATTGCGAAATCTTGCATTTGAAGGTGTGGATTGAGAACATGCGAGCGCAGTCGTCTATCGGCGAGGTGGTCTGCAACAAGCCTGAAAATCTCAAGGGCACCTCGTTGGCCAGGGTCAAAAGAGATTCGCTTTGCCCCTCCCATGCTGACATCAATCTCGAAGAGCCATTACAGTCTCAAGACATGGTTGTCACTCCATCCACCAAGGTTGTCCAGATACCGAATGCCAAAGATGACGCAAAGAAACCCACCCCTGCAAACGGCCCCGAGACAGTCTGTGGATCAGTGTGCTCTTGTTACCCAAGTGCGGGTTTTTTAATGCACTGCGAAAACCGAGGCATTCAAAGGATATCGGATATAGGCATTCTCGAACAAAGCCCAACCAAGCTGTTTTTGTCTGGAAATATGATACAACGACTTTACAAGTATGATTTTGTGACATACGACACTTTGGATGTGCTTAATTTGTCCAACAACCAGATCGACTACATCGACAACGAAACCTTCCTGAGCTTGAGCAATCTAAAAAAGCTGCAACTGAATGGAAACAGGATAGAGAGAATCTCTGCAACTATGTTTCTCGGTCTTCACAACCTGGAGTACCTGTACTTGGAGTATAATGTCATCAAAGAGATTGAGGCGGGATCGTTTAATCCTTTGACAAATCTGAGACTCCTGTTCCTGAACAACAATCTACTCAACACACTCCCAGCGCAAATATTCCGCAATGTGCCCTTGGTGATGTTAAACCTAAGGAAAAACGTCTTTACGCACTTACCGGTGAGTAATGCCTTGGAGCAGCTCAGTTTTCTGGAGCAAATTTATCTTGAGGACAATCCCTGGGACTGCACTTGTGATTTGGTCAGCCTCAAACAGTGGGTGGAAAGGCTTACCAGGGATACTGTGGTGGGAACTATCTTATGCAAAACTCCACAAAAGCTGGCCGCTGTTGATGTTAGAAACCTGAAACATGACATACTCTGTCCTGGATTAGTCACTTATAAGTCCATAGGCAAACACACGGAGGATGTTTTTTTAGTCACGCCTGCTCCGCAAGGTGGCACCAGCAGCTTCTTCGGGTCTCTGAAAGAAGTGCCACTTTCAGTGCTCATCCTCTGCCTTCTCATCCTATTCCTGACCGTCATTTTCTGTTCTGCTGGGATAGTTGTGTTTGTGCTACACCGTCGGCGGAGGCAAGCCAAAAAGAAACAAGCTGAAGAGCAACCTCGCGAGAGCAGTCCCATCCACCTGCATTACAGCATGTACGGCCAGAAGACCACCCACCATGTAACCGAAAGGCAAGGACCTGTCATGTACGACGAACCATCGCGTAGCCCCATTGTTCAGGTTTGCCGAAACCCTAGTTACTGCTCCCAGCACAAAGAATACGAGCTAGGCGACTACGATAGTGAGAAAGCCAAGCATATCTGCCACAGTCTTCTTGATAAGGGCAATGAATCCCTGCCCAACGTGAAGTTCAGGGCCGTTTCCGACTATCCCGCTGAGTTTGTGGGTTTGGGAGATACCAGTTCCTTGTACAAGAGCATCTTAGAAAGGGAGCGGGAACTCCAACAGCTCAGCCTCACCGAATACCTCAGGAAAAACATTTCACAGCTACAACCAGCTGTGGACATGCAAGTCCCAAACCATCACAAAGAGCTGAAGCTCATGGAGACTCTCGTTTATACAAGGCCTCGGAAAGTTATGGTGGAACAGACTAAAAACGAGTACTTTGAACTCAAAGCCAACTTACATGCTGAACCAGACTATTTAGAAGTCTTAGAGCATCAAACGACTTTCAACTGAGATAAGTACACTGTATACTTTGATACTCCAAGTGCCTTGAGAGTTTATTCTGGGTTATAGAGAGATATAACACAACAAATCCAGAGTAGAGGCGATTCTCACGATGCAATCATTCGATGTGGACACGATGTCTATTTTTCAGGTGGACCTTTGCTATCGGACATGCAGAAAGAGCCACAGAGTTACGTCTTCGGACGCGATTGGCTTTGATAGCAGCGTATTTGTTGTGCGTTGTGGTTAATGCATTCTCTTTATGTTTACTACACAGTAGAGAGACTAGCATAGATTCACTTCACATTTCTATCTCTGTATCTCTAATGTACGTGGCAGATCTTTTAACTCTGTAGCAAGGGAAGAAAAcatgttttctttcattttttttttctgtcagacagAACATTTATGGTTAGTTAAAACATTCCCTGATTTGCTAAGCTTTGAATTAAACATGCCCAACACAGTTTTCgtgcattaaatattaaataatgggGGTACTTGGATCTGAAGATGCTGGAAAattgcatttattaataaataaggcGCCATCAACAGCAAGCGGCTTGCCAAGCGGCTATTGTTTTGACCCTAAGGTCAGACTTTATGAGTGGGCTCATTTATCGTGTCTGAAATTGCCGTCTCACCTGGAATTCTCAACACGCCCGGAGAGTTTGTTCACAAATTATGTCATACAGACCCACTTGCTCATTACCTCCACTGTTTCTGATATGGACAAAAACTCTGCTGGGCTTCTTTCTCGGAGAAAATGAAAAGAATTGCACTACTTAAAATACCATTTGAAAGTGGTTGATGACAATCACGTTGTGAGTCCGCACAGTCTATGCCATTTTTCGTTTCCAATTGGAAAACTGAGTAGTGTAGCTTCTGGTTTGTATATTAATGTTGTTTGAAGTTCCTTTCGAAAACACAAATCATATCCGACTATTTTCTTTCAGCATGACAATTATGCAGGGTGTTTTATCTTCATCAACTGGCTGGAGAAGAAAAGAATttctatatctatatatgtacATGTATAGAGAAAATATGCACACAGACTATTGTGTTAAGCCTTGAAATGTTTTACTGTATGGAAGAGCACCATAGCTTTATTTTGTACAAGTGTGGATGAGAGTTATTTATTCTGTATATTTGtacataattttacatttatatgtttGTGTGCCTTTAACGTGGTACCAATTAAGCTGtacataacaaaataataataaaaatatatataataaattg

Function

symbol description
slitrk6 Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in high myopia-sensorineural deafness syndrome. Orthologous to human SLITRK6 (SLIT and NTRK like family member 6).

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2816 Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in high myopia-sensorineural deafness syndrome. Orthologous to human SLITRK6 (SLIT and NTRK like family member 6).

Ensembl:

ensembl_id ENSDARG00000098769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000112 True 3890 mRNA 0.44 2 4101741 4154332

Neighbor

gene id symbol gene type direction distance location
XLOC_000054 CABZ01063288.1 coding upstream 341707 3759924 ~ 3760034 (+)
XLOC_000053 NA coding upstream 381138 3718666 ~ 3720603 (+)
XLOC_000052 gpc6a coding upstream 1065722 2712956 ~ 3036019 (+)
XLOC_000050 farp1 coding upstream 1657531 2301958 ~ 2444210 (+)
XLOC_000051 CR352215.2 coding upstream 1698517 2403103 ~ 2403224 (+)
XLOC_000056 FO744838.1 coding downstream 443728 4598060 ~ 4680477 (+)
XLOC_000057 NA coding downstream 747128 4901460 ~ 5030155 (+)
XLOC_000058 spry2 coding downstream 1119149 5273481 ~ 5277583 (+)
XLOC_000059 NA coding downstream 1157147 5311479 ~ 5313595 (+)
XLOC_000060 tuba8l2 coding downstream 1248144 5402476 ~ 5419116 (+)
XLOC_000049 CR352215.1 non-coding upstream 1825999 2275605 ~ 2275742 (+)
XLOC_000044 NA non-coding upstream 2078096 2023409 ~ 2023645 (+)
XLOC_000064 NA non-coding downstream 1552638 5706970 ~ 5728684 (+)
XLOC_000065 NA non-coding downstream 1640681 5795013 ~ 5799092 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_01855614_01858092 SLITRK6 coding CI01000299 null 1855614 ~ 1858703 (+)