LOC113523777 (artn)


Basic Information

Item Value
gene id LOC113523777
gene name artn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16491681 ~ 16519158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909859.2
TGTACTGCGCCAGGGACTTTGgctgcgcgcgcgtgtgtgtctgtgtgtgtctgcgcgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgtgtgtgtgcgcgcgcgcgtgcgcgCACTAAACTGAGCTTTTCCACACTCTGTGGTCCATAGTTTCGCTGGAAACTCATTTGGATTCGGAGCTTAAAACTATGCCTCCGTATTCCAGGGCAGAAGTGGAGACAGTGGATCAGCCAAAGGAAACGTGTTTGGGGTTCATTTTGAGCGGATTGTTTGCATCTGTCATTTCGTGCAGAAGTGCGTTTTTACACACAGGTCCATGAGAGGAGCGCGAGCAGGGCGCAGAAAAGATGGCAAGAGGTGGTGGAATCAGCAGGATCCCATTGCAACATCTGCCCAGTGTCACCTGACCTACTGGAAGGTGATTTTcctagtgagtgtgtgtctgctggAGATTGTGGATGGGCAAAGACTTGCAGAGAAGAGGGAAGAATCACACTCCACCACACTGATGGCCCCAAAAGAGCAGAGACAACCCCCATGGGCCGCACTTTATGATCCATCCTTGgcagaggaaggagaggaatACAGGGCCAGATGGCATCGTTCTCTAGCAGACATTTCTGTTGCTTATCGAAAATCCCGCAAAGAACGCAAGAACCGAAAGCGGCAGCGAGAAAATCTCAACCAGGACTGTCACCTTGAGAAGAAACAGATGCGTGTGCGTGACCTGGGCTTAGGCTATGATTCAGACGAAATCGTGCTCTTTAAGTACTGTGTGGGGACGTGCACGAGCTCACGGAGGAACTATGACATGGCGCTTAAAATTCTGACTGAGAACGGCAGCATCTTGGGCCGTGATGTGAGCACTCATCCATGCTGTAGGCCTACACGCTTTGAGGCAGTGTCTTTCATGGACACCCGGACAAACTGGCAAACCATCCGGTGGCTCTCAGCAGCCAACTGCAGCTGTGTGgggtgagaggaggagagagagcagcttGGTAAAAATGTCAGAAAGTCAGAAAACTCCGGGATGGACGAAGACAAGAATTTGTCGAGGTTGTACCTCTTCTGGCACCTCAGATGGAGAGCACAGCTGGTTGTTCCATAAGGAGCAACATGACAGATGCAGATGTTGCAGCTGTTGTGCCATGAATGGGGTGGAATAGCGGCAGAGAAGATTAATAAAGGGGCAAGCTATAGTGCTCTCCTGTAAGAGAGAGTGGAGAGGATGCTCATCTGATGCTGCAGGGAATCCGAACTAATTCACATGAAAAGCAAACTGAGAATGCAATATGAAAAGCatcatataaaaaaagagataaaaactGTTAACAGTACCATAGAGAATGATCCTTGGATAATCTCACTAGGAGCCAGGAACTTGGTAGCCAAACCTTGAAGGAGGGTCTATACTGTGGAAGGACAAAACTGAtaagacaccacacacacacacacacacacacacacacattatattacatgTCACCTTCCCTTCATAAAGTAACAGCCTCTGTCATTAAGTTCTCAAACAGCCACTTGGGTGTCTGTAGTATTCGTTAGACATGTGCCGATTTTAAATATTCATCgtgatattaaatatttatcgTGATAATTGCCTAACCTTTTTATCCTGGAACATTACAGTGTACTACATGTTGACCCAGTAAGAACACATTAGATTTTGTCCAAAGTCAGGAACCTTGGAAGACAGTTCTACCATGCCAGTGTATGCAACACAATGTATGCTAAAGCATGTTATATTGCTGCGTGGTTTACACTTAGAAAAGGTACCGAGTCCAGCTTCTTGCACTCTATAGAAGACACATGCAGCCTCTCCTTCACCTCGGCCCAGGATGCACATCAGCATAGGCTCACGTATTGCTACATTAGCAACTCTTTTACAATagggagcattttttttttaatgatttttaaaaggtCAGTCCTGATTCCGGTGGATTGATGACATTTATCTTCTTGAAGCACCACTAACATACTTATTTCCTTACCTTATTACCTCATTGGCTTTTTTGCATTGTTGTAGAacaactgcattttatttaatcgCAGCTTTCTTGTTATTATAACAGTTTGGGATCTAATTATGATATGCATTGTTTTTATGTCTTGTTTATACAAAGGTTTGAGGACTATGACTTCAGGTTCAGGTAAATTATTCAGTGGGCATTATATACAGAATTTGAGTCTTACATTTAGCTGAAGGTGAGATGTTGAGATAAAGCATTACATGGCTTGTCTAGTTTGCATGCCTGTGGGCAAAAGTTCACTCAAAGAACTTCAGATAGGACTTTTATTATGCCAGTGTGGATATAAAATTCGTAATTGGGTgagtttttgttcttttgacCTTTAGATGTCTTTCCTTCACACAATGACCATCAgttactgagatttttttttttaaatctgcttttTGCTTTTGCTCTTGCTGAAGTTTAATAATTGTTGCACAGTTTGCGTCACTTCTATTATTCACAGATCTCTTATTCATGGTAGAAGAGGAACTTGTCCAGGAACTGTGTAGTTTTCTTTCAGGACAGTTATGAAACTCTTTAGTTTCCAGAACCTCAGTGAAAACATGGCACTTGATTTGTGCTGAGGTACTTgacacagcattaaaagaaggaaaatattcagtcaacatcacacacatttatttattggaccTTAAATATGCCAAACCAAATATAATACCGGTCCAATATTTTGAAACTGGTCCAGTTGTGATACTCAGTATTGGATCGGTGCAGTCGTAAAATTGAGGGGTCAGTCATCAACCAATTCATGGTGTAAAGCATGACAGTAACAATACATTGCTAAATGCAAATCCAATTTCATTTCAACAGTATCTGCTCATTATCAGTATTTTAAGTTCACTGTTCATTTCATATtggaacacacactgacaaataGGCAGGGTAGTACTGCTTTTCATACAGGCCATGCTCACTTTCTCTTCATGTTATTTCCATATTGTGGCACATTATTTCTGTGTAAACCAATTGTATTTACATGAAGGGAATTGGTAACTACTGGTATGATAAGATGGTCTAACCATGCAGTGCTGGAAACAGACTCAGACTTATGACTCCGACATAAGAAATGCATCCCAGATACCCAAGCAACATTGTCTCTAATGTTATATGGCAGCAttttaatactgtttttaaCACACGCTTGTCGATTTGGCCTTGCTCCTAGTCACTATGTTGTGAACTGTTCCATGGCTTCAGTAGTGCAATTGAAGTTTGTAAGGTGACCCAAGAGGAGTCAACATCACTGTAGGTTTCAACTTACAGTATGTGTCCACTTGCATGTGCCAGATCTGTGTGGTGCATGATGGTTGTGATACAGTTCAGCCACAAAAGTTCAGCAAAGTTCAATTTGCTTCAAAgttcaatatgcaaatgatgtTAGCCGAACAGATGAGGGTAGATGTTTGAGcaggaaaacctttttttaattccattctAAAGAAGATGAATGTAGCTTTgaattaaattgtaataatacTGAACAAAGAGTGgcttagttattagttattattaatattattactattacaaaatataaattatatgaacCTGCTAAAGAAATTGAGTCTGATTTCCATCTATCTTTTATTGCAATTCGATGCCCTTTTTAAAACAAGGATGTTTAAAAACAGTATTACAACATAAAGCATAAATGTATATGAGGtccatgaaaagaaaagaaacccaATCATCCATTTCTTTGATTTGTGT

Function

symbol description
artn Predicted to enable growth factor activity. Predicted to be involved in peripheral nervous system development. Predicted to act upstream of or within axon guidance and induction of positive chemotaxis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Biomarker of acoustic neuroma and pancreatic cancer.

NR:

description
PREDICTED: artemin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909859.2 True 3776 mRNA 0.41 4 16491681 16519158

Neighbor

gene id symbol gene type direction distance location
rad54l rad54l coding downstream 2752 16476425 ~ 16488929 (-)
LOC113531657 LOC108272136 coding downstream 37115 16436840 ~ 16454566 (-)
prkcda LOC108271968,LOC108440644,LOC107582675,LOC103030273,LOC107667398,LOC107721176,LOC107673500,LOC107712078 coding downstream 61585 16419260 ~ 16430096 (-)
ddi2 ddi2,LOC102794950,LOC107721177,LOC107673502,LOC107667352 coding downstream 74862 16406576 ~ 16416819 (-)
si:ch73-15b2.5 LOC108272055 coding downstream 85199 16400949 ~ 16406482 (-)
st3gal3a st3gal3,LOC108412691 coding upstream 15610 16534768 ~ 16586246 (-)
kdm4aa kdm4aa,kdm4a,LOC108412690 coding upstream 70189 16589347 ~ 16622597 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding upstream 106496 16625654 ~ 16832868 (-)
szt2 szt2 coding upstream 547197 17066355 ~ 17169352 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding upstream 667487 17186645 ~ 17191459 (-)
G28537 NA non-coding downstream 1766 16462102 ~ 16489915 (-)
G28508 NA non-coding downstream 132160 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 162260 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 224926 16266556 ~ 16266755 (-)
G28384 NA non-coding downstream 226521 16264924 ~ 16265160 (-)
G28779 NA non-coding upstream 51632 16570790 ~ 16571524 (-)
G29119 NA non-coding upstream 534930 17054088 ~ 17054656 (-)
G29167 LOC108272186 non-coding upstream 874300 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 875608 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 904713 17423871 ~ 17429778 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 355966 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 996472 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1030680 15456635 ~ 15461001 (-)
G27843 NA other downstream 1192662 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1615691 14872948 ~ 14875990 (-)
G29158 NA other upstream 753797 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 953172 17472330 ~ 17529315 (-)
G29263 NA other upstream 1429999 17949157 ~ 17949718 (-)
G29279 NA other upstream 1551829 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1629070 18148228 ~ 18195628 (-)

Expression


Co-expression Network