ttc22 (ttc22)


Basic Information

Item Value
gene id ttc22
gene name ttc22
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20982532 ~ 20988867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913045.2
TCTTCTAACTTCACATGTATTGACTAGTGAGTGCAGGAAACCAATACTGAAAGGGAGAAGCACTTGTCAAACCACATCATTCTTCACTCCTCCCCTGGATTTGCTTCGCCATGGTAAACCTGTATTTCCTGTCCTTGTCACAACATTACAGCATTTCTATTGTCTGGCTCTATCAGTATTAGTATGTTTGGTGGTGAAGAGACAACCATGGAGGAGAGCACAAAGGAGGACCTTCAGTCTCTGATTGAAGGCTTGCCCTTCATCCCTGGACACTTTCACCTGCTGCTGAATCTAAACATCGAGTCAAACGGTCCAGTCACCCTGCGCCTCCGTGACACGCAGATGAAGCGTGAGAACCTACGGGCTGAGCTTGAGGCTGAGACAGGTAGGTTGCAGTATGCTATACGAAACGTGCTGGGCTTACTAGCCTACCATCTTGACGAGCTGGAAGAAGCTGAGGAGGTTTTCCGTAGCATCTGTCAGGAGGATCCAGGAAACCTCAACGCCTGGGCCAACCTAGCCCACGTGTATGAGAGGCTCAAACGGGATGGTGAGGAGAGTGAGTGTCTAGAACGTGTGAAAGTTCTCATGGATCTGGAGACCAGTGAGAGCCCAACAGAGGGCAGGCTCAGGGCAGCACGCTGCCTGATAGAGCAAGCATTCGCCCAGCCTCATGATGTGGAGCTGGAGCGAGAGGAAGACCTGCAGGAAAGACTGACCACTGCACTCACTTTGTATAACCGAGCTCTTCACTATGGAGGTGAACTGGTACCTAAAGAAGAGAAGTGGAGCTGGTATTTCAAAATGGCAACAATTCACATAAGATTATATCATATTGTCAACGATTCAAAGGATATAGAGTATACTAGGCTTGCACACTTCAACAAGGGTCTGGCATTGCTAGCAGAGACTCTTAAATCAGACACAACACACCTCAAAGCTCTTTCCTGGTGTTACATTGGTCTCATGCTTGAGAGGAAAGACGAGTTCTCCATTGTCCCAATGTCAGTTCATGACTGTGGCCTGTCTGGATCTGAGCCGCTGTCGTGCTATGGATCGGGAATCAAACTGGCCACAGATGACGCATTTACACTGAATCAGTTAGCCAACGTGTTTTTTCAGTCAGGCAAACATGAGATGTCAATAGGCATCTGTAACATGGCCCTGAATGTGCTGCCTGATGCAGAGCTAAACTGGAAAGCGTACTGCACTCGAGCTAAGCTTAAACTCACAAACTATGTTAAAGCCTTAGACGAGGCAAAGCAGGGACTGAGTGGGATTCCTGACCGTCAGGACCTGAGAGAGGCCCGAGCTGACCTTGAGCGGGTGTTGAGTGTTCAGCCATGTCTCAGGACTCATCTAGAGATGGGACAGGTCTACTACTACATGGGTGTGGATGCTGTGAAGGAGAGTATAATGGTGGATGAGATGGCAGTGAATCAGGCTTTGGTCAGCCTGGCGCAGGCCTTGAAGTGCCCACTGGGTTCCACTCTGCCAGAAATACAGCTCCTGCGTGGCCGCTGCTTGCTGCTtaaaggagaggaggagaatgcCATCGACTGCTTCAGACAATCACTGGCACTGGAACGACCTGGAAGCTATCAGCAGCAGGCACTGCACTTCCTGCTAGAGGCTCTGTTGACCAGTTTTGCTAAGAGCACAGGGGACATCAGTCACATTTTATCCCAGTTGGAGGAATGTGTAAAGCAGGCTGAGGAGAGACATGGCACTGACACAGTCCAGGCAGAGCTCAAGCTGTTGTCCAGAACATACACTGATGAAGTGGCAGAGCTGTCAAGGGAACTGGTGAAAAACGGGAAGTTGGGAATGGTGAGGAGACTGCTGCAGAGCATACAGCCTCAGGATAAACGACCTCTGGGCAGATCTCTGTCTGCGTGAGAGTAAAAGAAAAGGCCTGTGAGCACTGGACTGCCTGGGACTGAATTatcattcatgtggatgctttGTAAAGGGGATTTTCATGGGGTATCCTGGACTGCTCAGTCAAACCAAATACAATGGTTACTACTATTGTTTGAAAAAGGAGTGAATACAGctttacatatttaacattataaacaggaaaagttcctgttattgcaATACACTGAAACCATGTCATACTGAAAATACACTTTTAACTCCAAACTAACAGCTGTTGTTTTCTGAT

Function

symbol description
ttc22 Orthologous to human TTC22 (tetratricopeptide repeat domain 22).

NR:

description
tetratricopeptide repeat protein 22

GO: NA

KEGG:

id description
K24933 TTC22; tetratricopeptide repeat protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913045.2 True 2170 mRNA 0.48 7 20982532 20988867

Neighbor

gene id symbol gene type direction distance location
wwc3 wwc3 coding upstream 33895 20894023 ~ 20948637 (+)
cldn34a cldn34 coding upstream 102065 20876945 ~ 20880467 (+)
shroom2a shroom2 coding upstream 110836 20824340 ~ 20871696 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 299041 20674401 ~ 20683491 (+)
meltf meltf coding upstream 310786 20658819 ~ 20671746 (+)
wdr78 wdr78 coding downstream 10616 20999483 ~ 21011730 (+)
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding downstream 419887 21408754 ~ 21448083 (+)
si:dkey-148h10.5 NA coding downstream 794925 21783792 ~ 21795509 (+)
dock7 dock7 coding downstream 981107 21969974 ~ 22034090 (+)
kank4 kank4 coding downstream 1059649 22048516 ~ 22101105 (+)
G30747 NA non-coding upstream 18891 20963432 ~ 20963641 (+)
G30715 NA non-coding upstream 92822 20835487 ~ 20889710 (+)
G30721 NA non-coding upstream 130856 20848491 ~ 20851676 (+)
LOC117599214 NA non-coding upstream 200624 20770555 ~ 20781908 (+)
G30620 NA non-coding upstream 301762 20680400 ~ 20680770 (+)
G30791 NA non-coding downstream 104747 21093614 ~ 21093816 (+)
G31260 NA non-coding downstream 396139 21385006 ~ 21385342 (+)
LOC113526220 NA non-coding downstream 413375 21402242 ~ 21406386 (+)
G31384 NA non-coding downstream 620366 21609233 ~ 21612878 (+)
LOC117599889 NA non-coding downstream 647317 21636184 ~ 21642350 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 324452 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 962306 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 1445335 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1895321 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 2033795 18932683 ~ 18948737 (+)
insl5a insl5 other downstream 25971 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 1608728 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 2644739 23633606 ~ 23653555 (+)
G32684 NA other downstream 3031511 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 3664123 24652990 ~ 24656248 (+)

Expression


Co-expression Network