tgfbr3 (tgfbr3)


Basic Information

Item Value
gene id tgfbr3
gene name tgfbr3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17666584 ~ 17767280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913172.2
AAGCCCGCCTCCCCATGGAGTACACACTGCAAGCGGGGATAAAACTTCTTGGGACCTCTTACTCACGTTATTATCCCGAAATCTCGCCAGCTCGTCTGACAGCTGCTGATATTAATGAACAGAGACTGCGTGATGCCCGTATGACGCTTACTTAACCGAAAGGAAACGGTAACTTTGGCGTTGGGTTTGTTCCTGCCGCTGCTCCAAACTTCTACTTCAACCAGAAGTTTGCTTTGACTGTGAAGACTGGCTGGTGGCGTTCCTGTGTGGAGTGTACTGAGAAGAAACTCTACCCTCACTTCTGGAAATCTCTTGTGTTCACTTCCCCGCGTGATGGGACACACACTCCTGGTAGTCGTCGTGCTCCTTGCCCTCAGCAGTATGGCTTCTGCAGGTCCACTGTCACGTAGCCCATGTGAGTTATTACCTGTGGGTGAAAGTCACCCTGTGCAGGCCCTGCTGAAGAGCTACACAGCTCTATCAGGCTGTGCGAGCCGTGGAACCACCAGCCTCCCTCAGGAAGTTCACATCATCAACCTGCGCAGCAGTAACACTGAAGAACTGAGAGAGGAACCTGAGGTGGCATTACACCTGCGGCCCATCCAGTCTCTGTCAGTGCACCAAAAGCCGCTGATCTTTGTGCTGAACTCGCCAAAGCCGTTCCAGTGGAGGATTCATGCAGATAACTTGGCTCCTGGAATTAAAAGGATCTTCCACGTGTCAGCTGGCTCTGTTGTGCAGTTTGAGGATGGAAATCTGTCCCTCTCTAGTGAGGTGCACAGAGAGACGTTACCGCATGGAAATGAGCACCTGATGTCCTGGGCTAAGCGCCTGTACCGCGCCATCACATCCTTTACCGAGCTCAAGATGACCCATGACGTCTACATCAAAGTGGGagaagACCCTGTATTTTCTGACACCTGCAAAATCGACAACAAGTTCCTGTCCCTGAACTACCTGGGGAGTTATATCCAGCCTCAGGCATTGGTCCTCTCTGGTCCAAATGTCGATCAAGAGGTACACATCATCGAGCTGCAGGCCCCAAACTCCAGCAGTGCGTTGCAGGTGGATGTGACGGTGGATTTGAGGCCAGTGGAACCAGAAATCCCTCTGCACCGTGACATTGTGCTGCTCCTCAGATGTGACAAGTCTGTGAACTGGGTGATCAAGGCCCAAAGTATAATTGGCAAACTGCATATAGTGACATCAGACAGTGTTAGCTTGAATGCTAGCACGGAGCGACTGATGCAGGTGTCCAAAGCGGTGAAGCAGAAGCTGCCTGCAGGAGCTCAGGCTCTGATCCAGTGGGCCGAGGAGAACAACTACGGCCCCGTCACTTCCTACACCAGCACTGCTGTGGCCAACATCTTCCACCTGCATGTTAGAGAAGCAGAAGTGGTAGATCCTTTAGAGAGCATGTTTCCCCCGGAGCTCTCTATCCTGCGAAACACAGATCCTCGCGAAGACACCCGTCCCAACCTGCCCTTCCTCTTTCCCCCGGGGGTGGACCAGAATCCATCCTTCCCTTTCCCACCTACTCTGGAGGAGCATGCGTGGTCACGTCGGGGTCCTGAGGAGCAGCGTGGAGCTCTGAGTGGGATTCTCAGCGTGCAGTGTGAGGAGAGCAGGATGGTGGTCAGCATAGACAAGGAGAGCCTGCAGGCTACAGGTATAAGTAAAGCCAACATAACCCTGCAGGACCCACAATGCAAAGCAACATCTAACTCCACCCACTACATCCTGGAGACACCACTGACTGGCTGTCAGACCACTAAATACCCCCTGCACCACCCCAGCCCAATGGTCCTCTACATCAATTCAATCGTGATCAGACAGTCGGACAGCAGGGATGGCAGCGGCTGGCCATTGGATGATGAAGACCTGGAGTCAGGAGACGTGCTGCTCTCAGAGAGAACATCATCTGGACACCGCTCTACCATTTTGtTTAACTGCACGTACCGTAAGGCTGAAGATGCTCCTCCTCACTTCCCCTGGTCTCGACCAGATGCTCAGCACGAGCCTGTGGAAAACGTGACATTCAGCATGGAGCTGTACAACACCAGCCTCTTCCGCCACCCACAACCTCCCTCTTTCATCCAGGTCATGGAGAACAAGCCCGTTTTTGTGGAGATCTCAGCCACTAAAGCAGATCCTGATCTGAGCTTCATGATTCAGACATGCTTCATCTCTGCACATTCTAATCATGAGGTGTTGTCTGATTACGTCCTCATTGAGAACATTTGTCCCACGGATGAGTCTGTCCGCTACTACCCTCAGAAAGTGGACAGGAAGCGCTTCAGCTTTGACTTCAGGTCAAAGTTCAAGGTACCTTTGCTGTTCCTGCACTGTGAGATGTCCGTCTGCTCTAAGAAACACGATAAGCATCCAGGACTGCCAGAGTGTATGCATCCTAATCAGGCCTGCACGTCTGTCAGTGGGGAAACCATCATCAAAATGATGATGAACAGCAAAACCTCCACAAAACCGCTGGTGGTCATCGGTGATGAAAGCAGCAATGAAGATGATGATATCAATTATGGGTACACAAACGAAAAAATGCCTGattcCACAACCCACAAGCCTCAGTGGCCTCCAGGTGGCAGTCCCCGTGATTCTCACATGTATGTACTGGACACTCCGACTGTGGTGGGCATCGCCTTTGCAGCCTTTGTCATAGGAGCTCTCCTTACAGGAGCACTCTGGTTCATCTattcacacacagGTGTTCCAGCAGTGAGACAAAATGTGCCAAGGTCTCCTCCTGCCTCAGAGAACAGCAGTGCAGCTCATAGTATAGGCAGCACTCAGAGCACACCATGCTCCAGCAGCAgtaatgcatacacacatacataaacacacacacacacacacacacacacacagacacacacacacacacacagagacaaagtgCAGGCCTGGCAGGTCATCACATGGGGCTCAAATTAATTTGTCTTCAACATCATCAATCTTGGATGCTTTCTGAGAGTAAAGGACTGATCGAGTTTTGTAGAACATCACATTTTGTAACCAGCTCAGTTTTCATCCTAAAATAGTTGGGAATgtggaaaaggagaagaaacaAATCCTTGATAAAATGTGGATGAACGATGAAAAATGCTGGTGAGGAACCAGGCATGAAAAACCCCTACACCagcacatttaatttttgcCATATATGGTTGGAAACGTCTGTCGATAACAAAGTTTGTTTACTGCAGTTGTTCTTACAGTGTGGAAGCATCTGGAAGATGAGAAAGAGTTCGATGCTGAGCGTGTGGTTGCACAATGTTTGATGTGCCAAAGCAAGCACAATTCTATTCATGCGTGATTTCAGCCAATTCATAATTAATACAATGTCTGTCTGGTTTCAGAGCAATAATAATcctaaagggaaaaaaatagacCACATATTTGATACAAACTACTGCATTTTGTCCATTTACTAGACATTTATGTTCCATGTTCCAGTggaaaaagttgtttttttttattatatgttcCACAAGCTGTATTTCCTTTGTTTGACTTATTAGAACTGTCATAAAAGCATCACAGCCAAACCAGcacttaatttaataatatataaaaatatatgcttAAAATATAAGATAGATATTACAGTATGGTCACGTTATTACATAACAGGCACAAAATGCATTAACCTATTAGAAGAAATACTAGGGGATTCAAAACTAAAAATTAGCAATGAAATTGTGTTTTCCATGTGGAATAGCCTTTTACATGACATAAACGTTTGGGGTTAGTATTGGGGTTAGTATTGGGGAAATTAGTAATGCTAAGAACTAATTTCCAacagaaatctgaaatgaaGAACCTGTTCGGATCAGTTGTAATGCAGACCCGGTTTTTCTGAGGTATCTTTAAAATCAACTGATTGTTATaggtttaaaaacacaaaatttacaAACTGCAATTTGTTCCCTCAGTTTAAATATAGCACTGATTTCATTATTCACCATCTTGATTTAAACTAATCAGTGTGGACGTGGTAtagtattattcatttaaaaatcattatacacaatatattgtgttatttattacataattgGTCAAGTATTGTTTTTTTGACCTTGTCTTTTCATTGAATATTGGTTATTACATGTTATTGGTTGAGACTAAGCCAATATTATACTAATAACCTGCCAGAAATTCATATATTTGAGGTCTTATTATAATTTTGTTCCATTGTTGCAGCAATATTGGGTCCTCAAGTGTAAATGTCTTGAGGTTTTATCAGCCAATACAATTTATATGTGGAtgtattgtaaaaatatataaatatatttttgtatataaaatttatataaagaattttacaaagaaaatgaTATTATACAATGATGTTATCCTAAAGCTATCTAACGTTTAAGCCAAGCTTATCACTTATTTTAATGTGGTTCTAATATAAGAATAGTATATAGATGATACCTAAAACAGAAATCATTTAaagaggaatttatttattgatgtaaATGTGCAGCAGCTGTATACAATAGTTTGGCTTAAACAATAGAGCATTTTTTACGTGTGGAAATGATTATGTAtaatcacaaaatattttagAGCATCTTTCAGAAACAgctttatatactgtagatatgaAGAGGAGCTACAGGAATAAGGAGAAGAAGCTTAGATATAATGATTGATTGAATTTATTACAGACCCCCCCTATCTGAAcattcagaaagagagagtagtTTATTAACAGAATACGTTATCTCTGTCATGgctattatatattttatgtgtacAGCAtgcaatgtattttttattttttttgtagattcaTCAGAAAGGTCTCCAGGATGAGAAACAGATTCACAAAACACTTCCTGATCAGCAAAGTCCCTAGTCCCCAGTGTTGAATTCACTCATACAGCATTCATTTATGTACACAATCtgcccaaaagtttgtggacacctgaccatcgcatccatatgtgctttttgacaTCTCATTACAGGTTGAGTCcccattttgctgttataataaccttctactagattttggagcatggctttggggatttgtgtGCTTTCTgccacaagagcgttagtgaggtcgggcactgatggcactgatgttgggtgaggagtcCTGGGGCGCAGTcaa

Function

symbol description
tgfbr3 Predicted to enable glycosaminoglycan binding activity; transforming growth factor beta-activated receptor activity; and type II transforming growth factor beta receptor binding activity. Predicted to contribute to transforming growth factor beta binding activity. Acts upstream of or within somite development and sprouting angiogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Is expressed in notochord; somite; spinal cord; and vasculature. Orthologous to human TGFBR3 (transforming growth factor beta receptor 3).

NR:

description
PREDICTED: transforming growth factor beta receptor type 3

GO: NA

KEGG:

id description
K05843 TGFBR3; transforming growth factor, beta receptor III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913172.2 True 5143 mRNA 0.44 18 17666584 17767280

Neighbor

gene id symbol gene type direction distance location
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding upstream 198426 17465581 ~ 17468158 (+)
znf648 NA coding upstream 228685 17433348 ~ 17437899 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding upstream 270445 17392329 ~ 17396139 (+)
LOC117595909 NA coding upstream 481901 17179243 ~ 17184683 (+)
hyi hyi coding upstream 600485 17054132 ~ 17066099 (+)
znf644b LOC108271612 coding downstream 37265 17804545 ~ 17840982 (+)
barhl2 barhl2,LOC107749991 coding downstream 151120 17918400 ~ 17922819 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding downstream 371775 18139055 ~ 18146917 (+)
LOC113536767 LOC108272161 coding downstream 531095 18298375 ~ 18413955 (+)
dzip1l LOC108271535 coding downstream 833679 18600959 ~ 18614825 (+)
G29036 NA non-coding upstream 131233 17530575 ~ 17535351 (+)
G28997 NA non-coding upstream 240261 17423821 ~ 17426323 (+)
G28889 NA non-coding upstream 528734 17100226 ~ 17137850 (+)
G28865 NA non-coding upstream 612838 17052930 ~ 17053746 (+)
LOC113524191 NA non-coding upstream 823199 16842244 ~ 16843385 (+)
G29281 znf326 non-coding downstream 316439 18083719 ~ 18085644 (+)
LOC113536874 NA non-coding downstream 590922 18358202 ~ 18360035 (+)
LOC113530672 NA non-coding downstream 697604 18464884 ~ 18467320 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding downstream 921373 18688653 ~ 18691007 (+)
G29640 NA non-coding downstream 1282946 19050226 ~ 19050438 (+)
tomm6 tomm6 other upstream 1265473 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1484275 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1563336 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 1876140 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2362090 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 1007490 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 1050122 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 1165403 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 1293817 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 1767065 19534345 ~ 19537197 (+)

Expression


Co-expression Network