st3gal3a (st3gal3,LOC108412691)


Basic Information

Item Value
gene id st3gal3a
gene name st3gal3,LOC108412691
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16534768 ~ 16586246 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913599.2
cactgatTTAACGCATGCCCACTACTGCTTAGTGGGGTACCGGATTGGGACAGGGGGTTATTGTTGTTAGGACGTGGTCTGGCTTGTGCGTATGAAGACTGAGAATACGGTGTAAAATGGAGTTGACGGCTTTTTCACAGGAACTGTGAGCGTTAAAGagcaagatgtgtgtgtgtgattcacgGGGCTTTCATCTCCTGGGTGCGTTTCTGAAaatttcctctgtttttttttttttcctgaggaaAATGGTGCAAGATGATCGTCTGAAGATGGCAACTGAGAGATGAGTGCGATGAAGCCCACGAGGAATGTGATGCTGGTGCTCTGTCCCATGCTGGTGCTCGGCTTCCTGTACTATTCGTCTGGGAGACTGCACCTCCGCCCCTGGAGCCACAGATCACAGGTGGACGTGGACCGCTCATCCTCCGTGGGACGGGTAATAGCATCACGTATAGTGTATGACAAGCAGGGGTTCCTCATTAAGCCAGATGGAAGACTgccGCTGGAGCTACAGTATAAGTATGGAAATCTGAGTAAAGGAGAATGTAAGCCCGGCTATTCGGAGGCCAAGATGACCTCAATCTATCCAAAGTTTGTGAAACCGGCCCCCATGTTCCTTGATCAGAATTTTAAACGGCTGTCGAAGATCAGCAACTACCTACCACCCTTCGGGATAAAATCACAAGAAAAGATCATTGACATCATTTTAGCTGAGGCAAGGAACTACGGGCTTGGAGGTGAACTGGACAGTTTGAGCTGTAAGAGGTGTATCGTCATCGGCAATGGAGGGATCCTTTCCAACAAGTCCCTGGGCTCCAGAATTGATGAGTATGATGTGGTCATAAGGCTGAACGGGGCTCCAGTGAGCGGCTACGAGAAGGATGTGGGAACTAAGACCACCATGCGCATCACATATCCAGAGGGAGCGATTCAGAAAACCGAGCTCTATGAGAAGAGCTCTCTGTTCGTCGTCTCTGCCTTCAAACCACCTGACCTCAAATGGCTCAGGCAGATAGTGTTCAAGGAGAAACCGAGAACACGGCGTGGGACAGATGGATTCTGGAAGTCAGTGGCGCGTGTCGTGCCCAGGGAAGCAGCAGACATGAGGATACTGAACCCGTATTTCATCCAGGAGGCAGCGTTTCAGTTCATCGGTCTGCCACACAACAACGGCCTCATGGGTCGAGGGaataTCCCAACGCTGGGGACAGTGGCGATCACGATGGCGCTGCATAACTGTGACGAGGTGGCGGTGGCTGGATTCAGCTATGACATGAGCAACCTTCATGCACCACTGCATTACTACGAGAAGCTCAAGATGTCCGCTATCAGAGATtCATGGACACACAACATACCGAAAGAAAAGGAGTTTCTGCGGAAGTTGGTGACGGCCGGTGTAATTCAGGATCTGACCTACGGAATCTGAgcatctctcacacacctgcacaaaTATGGAAATGCCATTGCTGACTCGCTTTTACCAAGCACCTGAGTATGCGGACTTCACGCATTAACATGGTTAATGGAAGACTCCACCCATCGCAAGTCTTGACGCTCCGGTCTGAGAACATGCTAGTATGTAAGACATAAAAAGGCGTGCTTTTACGCTATATCAGTCTTTGAGAAACTcccttttttaaaatggttttaaatgcAGCGTGAGGGACATGCCTTTGTATTTAAATAGTATTACTAGTGACATTAAGTATTGACGGCTGCAGGGACCACAAACAGCATTAGCACCACGGCTGTAGACACTAAGTGACAGCTGTACCACAGCAGTGAAACAGATACATTCTGATGCATTATGCACACTACATCATTTTAAAGATCTCATATGATGTATTGAATTTACTTTTTTCTCTGAAGTCCATCTAATCATTTCTGTTACAAAAACAGtcataattcattttta
>XM_034312433.1
actgatTTAACGCATGCCCACTACTGCTTAGTGGGGTACCGGATTGGGACAGGGGGTTATTGTTGTTAGGACGTGGTCTGGCTTGTGCGTATGAAGACTGAGAATACGGTGTAAAATGGAGTTGACGGCTTTTTCACAGGAACTGTGAGCGTTAAAGagcaagatgtgtgtgtgtgattcacgGGGCTTTCATCTCCTGGATGATCGTCTGAAGATGGCAACTGAGAGATGAGTGCGATGAAGCCCACGAGGAATGTGATGCTGGTGCTCTGTCCCATGCTGGTGCTCGGCTTCCTGTACTATTCGTCTGGGAGACTGCACCTCCGCCCCTGGAGCCACAGATCACAGGTGGACGTGGACCGCTCATCCTCCGTGGGACGGGTAATAGCATCACGTATAGTGTATGACAAGCAGGGGTTCCTCATTAAGCCAGATGGAAGACTgccGCTGGAGCTACAGTATAAGTATGGAAATCTGAGTAAAGGAGAATGTAAGCCCGGCTATTCGGAGGCCAAGATGACCTCAATCTATCCAAAGTTTGTGAAACCGGCCCCCATGTTCCTTGATCAGAATTTTAAACGGCTGTCGAAGATCAGCAACTACCTACCACCCTTCGGGATAAAATCACAAGAAAAGATCATTGACATCATTTTAGCTGAGGCAAGGAACTACGGGCTTGGAGGTGAACTGGACAGTTTGAGCTGTAAGAGGTGTATCGTCATCGGCAATGGAGGGATCCTTTCCAACAAGTCCCTGGGCTCCAGAATTGATGAGTATGATGTGGTCATAAGGCTGAACGGGGCTCCAGTGAGCGGCTACGAGAAGGATGTGGGAACTAAGACCACCATGCGCATCACATATCCAGAGGGAGCGATTCAGAAAACCGAGCTCTATGAGAAGAGCTCTCTGTTCGTCGTCTCTGCCTTCAAACCACCTGACCTCAAATGGCTCAGGCAGATAGTGTTCAAGGAGAAACCGAGAACACGGCGTGGGACAGATGGATTCTGGAAGTCAGTGGCGCGTGTCGTGCCCAGGGAAGCAGCAGACATGAGGATACTGAACCCGTATTTCATCCAGGAGGCAGCGTTTCAGTTCATCGGTCTGCCACACAACAACGGCCTCATGGGTCGAGGGaataTCCCAACGCTGGGGACAGTGGCGATCACGATGGCGCTGCATAACTGTGACGAGGTGGCGGTGGCTGGATTCAGCTATGACATGAGCAACCTTCATGCACCACTGCATTACTACGAGAAGCTCAAGATGTCCGCTATCAGAGATtCATGGACACACAACATACCGAAAGAAAAGGAGTTTCTGCGGAAGTTGGTGACGGCCGGTGTAATTCAGGATCTGACCTACGGAATCTGAgcatctctcacacacctgcacaaaTATGGAAATGCCATTGCTGACTCGCTTTTACCAAGCACCTGAGTATGCGGACTTCACGCATTAACATGGTTAATGGAAGACTCCACCCATCGCAAGTCTTGACGCTCCGGTCTGAGAACATGCTAGTATGTAAGACATAAAAAGGCGTGCTTTTACGCTATATCAGTCTTTGAGAAACTcccttttttaaaatggttttaaatgcAGCGTGAGGGACATGCCTTTGTATTTAAATAGTATTACTAGTGACATTAAGTATTGACGGCTGCAGGGACCACAAACAGCATTAGCACCACGGCTGTAGACACTAAGTGACAGCTGTACCACAGCAGTGAAACAGATACATTCTGATGCATTATGCACACTACATCATTTTAAAGATCTCATATGATGTATTGAATTTACTTTTTTCTCTGAAGTCCATCTAATCATTTCTGTTACAAAAACAGtcataattcattttta
>XM_034312439.1
cgcactgatTTAACGCATGCCCACTACTGCTTAGTGGGGTACCGGATTGGGACAGGGGGTTATTGTTGTTAGGACGTGGTCTGGCTTGTGCGTATGAAGACTGAGAATACGGTGTAAAATGGAGTTGACGGCTTTTTCACAGGAACTGTGAGCGTTAAAGagcaagatgtgtgtgtgtgattcacgGGGCTTTCATCTCCTGGATGATCGTCTGAAGATGGCAACTGAGAGATGAGTGCGATGAAGCCCACGAGGAATGTGATGCTGGTGCTCTGTCCCATGCTGGTGCTCGGCTTCCTGTACTATTCGTCTGGGAGACTGCACCTCCGCCCCTGGAGCCACAGATCACAGGTGGACGTGGACCGCTCATCCTCCGTGGGACGGGTAATAGCATCACGTATAGTGTATGACAAGCAGGGGTTCCTCATTAAGCCAGATGGAAGACTgccGCTGGAGCTACAGTATAAGTATGGAAATCTGAGTAAAGGAGAATGTAAGCCCGGCTATTCGGAGGCCAAGATGACCTCAATCTATCCAAAGTTTGTGAAACCGGCCCCCATGTTCCTTGATCAGAATTTTAAACGGCTGTCGAAGATCAGCAACTACCTACCACCCTTCGGGATAAAATCACAAGAAAAGATCATTGACATCATTTTAGCTGAGGCAAGGAACTACGGGCTTGGAGGTGAACTGGACAGTTTGAGCTGTAAGAGGTGTATCGTCATCGGCAATGGAGGGATCCTTTCCAACAAGTCCCTGGGCTCCAGAATTGATGAGTATGATGTGGTCATAAGGCTGAACGGGGCTCCAGTGAGCGGCTACGAGAAGGATGTGGGAACTAAGACCACCATGCGCATCACATATCCAGAGGGAGCGATTCAGAAAACCGAGCTCTATGAGAAGAGCTCTCTGTTCGTCGTCTCTGCCTTCAAACCACCTGACCTCAAATGGCTCAGGCAGATAGTGTTCAAGGAGAAACCGCGTGGGACAGATGGATTCTGGAAGTCAGTGGCGCGTGTCGTGCCCAGGGAAGCAGCAGACATGAGGATACTGAACCCGTATTTCATCCAGGAGGCAGCGTTTCAGTTCATCGGTCTGCCACACAACAACGGCCTCATGGGTCGAGGGaataTCCCAACGCTGGGGACAGTGGCGATCACGATGGCGCTGCATAACTGTGACGAGGTGGCGGTGGCTGGATTCAGCTATGACATGAGCAACCTTCATGCACCACTGCATTACTACGAGAAGCTCAAGATGTCCGCTATCAGAGATtCATGGACACACAACATACCGAAAGAAAAGGAGTTTCTGCGGAAGTTGGTGACGGCCGGTGTAATTCAGGATCTGACCTACGGAATCTGAgcatctctcacacacctgcacaaaTATGGAAATGCCATTGCTGACTCGCTTTTACCAAGCACCTGAGTATGCGGACTTCACGCATTAACATGGTTAATGGAAGACTCCACCCATCGCAAGTCTTGACGCTCCGGTCTGAGAACATGCTAGTATGTAAGACATAAAAAGGCGTGCTTTTACGCTATATCAGTCTTTGAGAAACTcccttttttaaaatggttttaaatgcAGCGTGAGGGACATGCCTTTGTATTTAAATAGTATTACTAGTGACATTAAGTATTGACGGCTGCAGGGACCACAAACAGCATTAGCACCACGGCTGTAGACACTAAGTGACAGCTGTACCACAGCAGTGAAACAGATACATTCTGATGCATTATGCACACTACATCATTTTAAAGATCTCATATGATGTATTGAATTTACTTTTTTCTCTGAAGTCCATCTAATCATTTCTGTTACAAAAACAGtcataattcattttta
>XM_034312442.1
ctgatTTAACGCATGCCCACTACTGCTTAGTGGGGTACCGGATTGGGACAGGGGGTTATTGTTGTTAGGACGTGGTCTGGCTTGTGCGTATGAAGACTGAGAATACGGTGTAAAATGGAGTTGACGGCTTTTTCACAGGAACTGTGAGCGTTAAAGagcaagatgtgtgtgtgtgattcacgGGGCTTTCATCTCCTGGATGATCGTCTGAAGATGGCAACTGAGAGATGAGTGCGATGAAGCCCACGAGGAATGTGATGCTGGTGCTCTGTCCCATGCTGGTGCTCGGCTTCCTGTACTATTCGTCTGGGAGACTGCACCTCCGCCCCTGGAGCCACAGATCACTGTATGACAAGCAGGGGTTCCTCATTAAGCCAGATGGAAGACTgccGCTGGAGCTACAGTATAAGTATGGAAATCTGAGTAAAGGAGAATGTAAGCCCGGCTATTCGGAGGCCAAGATGACCTCAATCTATCCAAAGTTTGTGAAACCGGCCCCCATGTTCCTTGATCAGAATTTTAAACGGCTGTCGAAGATCAGCAACTACCTACCACCCTTCGGGATAAAATCACAAGAAAAGATCATTGACATCATTTTAGCTGAGGCAAGGAACTACGGGCTTGGAGGTGAACTGGACAGTTTGAGCTGTAAGAGGTGTATCGTCATCGGCAATGGAGGGATCCTTTCCAACAAGTCCCTGGGCTCCAGAATTGATGAGTATGATGTGGTCATAAGGCTGAACGGGGCTCCAGTGAGCGGCTACGAGAAGGATGTGGGAACTAAGACCACCATGCGCATCACATATCCAGAGGGAGCGATTCAGAAAACCGAGCTCTATGAGAAGAGCTCTCTGTTCGTCGTCTCTGCCTTCAAACCACCTGACCTCAAATGGCTCAGGCAGATAGTGTTCAAGGAGAAACCGAGAACACGGCGTGGGACAGATGGATTCTGGAAGTCAGTGGCGCGTGTCGTGCCCAGGGAAGCAGCAGACATGAGGATACTGAACCCGTATTTCATCCAGGAGGCAGCGTTTCAGTTCATCGGTCTGCCACACAACAACGGCCTCATGGGTCGAGGGaataTCCCAACGCTGGGGACAGTGGCGATCACGATGGCGCTGCATAACTGTGACGAGGTGGCGGTGGCTGGATTCAGCTATGACATGAGCAACCTTCATGCACCACTGCATTACTACGAGAAGCTCAAGATGTCCGCTATCAGAGATtCATGGACACACAACATACCGAAAGAAAAGGAGTTTCTGCGGAAGTTGGTGACGGCCGGTGTAATTCAGGATCTGACCTACGGAATCTGAgcatctctcacacacctgcacaaaTATGGAAATGCCATTGCTGACTCGCTTTTACCAAGCACCTGAGTATGCGGACTTCACGCATTAACATGGTTAATGGAAGACTCCACCCATCGCAAGTCTTGACGCTCCGGTCTGAGAACATGCTAGTATGTAAGACATAAAAAGGCGTGCTTTTACGCTATATCAGTCTTTGAGAAACTcccttttttaaaatggttttaaatgcAGCGTGAGGGACATGCCTTTGTATTTAAATAGTATTACTAGTGACATTAAGTATTGACGGCTGCAGGGACCACAAACAGCATTAGCACCACGGCTGTAGACACTAAGTGACAGCTGTACCACAGCAGTGAAACAGATACATTCTGATGCATTATGCACACTACATCATTTTAAAGATCTCATATGATGTATTGAATTTACTTTTTTCTCTGAAGTCCATCTAATCATTTCTGTTACAAAAACAGtcataattcattttta
>XM_034312444.1
cactgatTTAACGCATGCCCACTACTGCTTAGTGGGGTACCGGATTGGGACAGGGGGTTATTGTTGTTAGGACGTGGTCTGGCTTGTGCGTATGAAGACTGAGAATACGGTGTAAAATGGAGTTGACGGCTTTTTCACAGGAACTGTGAGCGTTAAAGagcaagatgtgtgtgtgtgattcacgGGGCTTTCATCTCCTGGATGATCGTCTGAAGATGGCAACTGAGAGATGAGTGCGATGAAGCCCACGAGGAATGTGATGCTGGTGCTCTGTCCCATGCTGGTGCTCGGCTTCCTGTACTATTCGTCTGGGAGACTGCACCTCCGCCCCTGGAGCCACAGATCACTGTATGACAAGCAGGGGTTCCTCATTAAGCCAGATGGAAGACTgccGCTGGAGCTACAGTATAAGTATGGAAATCTGAGTAAAGGAGAATGTAAGCCCGGCTATTCGGAGGCCAAGATGACCTCAATCTATCCAAAGTTTGTGAAACCGGCCCCCATGTTCCTTGATCAGAATTTTAAACGGCTGTCGAAGATCAGCAACTACCTACCACCCTTCGGGATAAAATCACAAGAAAAGATCATTGACATCATTTTAGCTGAGGCAAGGAACTACGGGCTTGGAGGTGAACTGGACAGTTTGAGCTGTAAGAGGTGTATCGTCATCGGCAATGGAGGGATCCTTTCCAACAAGTCCCTGGGCTCCAGAATTGATGAGTATGATGTGGTCATAAGGCTGAACGGGGCTCCAGTGAGCGGCTACGAGAAGGATGTGGGAACTAAGACCACCATGCGCATCACATATCCAGAGGGAGCGATTCAGAAAACCGAGCTCTATGAGAAGAGCTCTCTGTTCGTCGTCTCTGCCTTCAAACCACCTGACCTCAAATGGCTCAGGCAGATAGTGTTCAAGGAGAAACCGCGTGGGACAGATGGATTCTGGAAGTCAGTGGCGCGTGTCGTGCCCAGGGAAGCAGCAGACATGAGGATACTGAACCCGTATTTCATCCAGGAGGCAGCGTTTCAGTTCATCGGTCTGCCACACAACAACGGCCTCATGGGTCGAGGGaataTCCCAACGCTGGGGACAGTGGCGATCACGATGGCGCTGCATAACTGTGACGAGGTGGCGGTGGCTGGATTCAGCTATGACATGAGCAACCTTCATGCACCACTGCATTACTACGAGAAGCTCAAGATGTCCGCTATCAGAGATtCATGGACACACAACATACCGAAAGAAAAGGAGTTTCTGCGGAAGTTGGTGACGGCCGGTGTAATTCAGGATCTGACCTACGGAATCTGAgcatctctcacacacctgcacaaaTATGGAAATGCCATTGCTGACTCGCTTTTACCAAGCACCTGAGTATGCGGACTTCACGCATTAACATGGTTAATGGAAGACTCCACCCATCGCAAGTCTTGACGCTCCGGTCTGAGAACATGCTAGTATGTAAGACATAAAAAGGCGTGCTTTTACGCTATATCAGTCTTTGAGAAACTcccttttttaaaatggttttaaatgcAGCGTGAGGGACATGCCTTTGTATTTAAATAGTATTACTAGTGACATTAAGTATTGACGGCTGCAGGGACCACAAACAGCATTAGCACCACGGCTGTAGACACTAAGTGACAGCTGTACCACAGCAGTGAAACAGATACATTCTGATGCATTATGCACACTACATCATTTTAAAGATCTCATATGATGTATTGAATTTACTTTTTTCTCTGAAGTCCATCTAATCATTTCTGTTACAAAAACAGtcataattcattttta

Function

symbol description
st3gal3 Predicted to enable sialyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Implicated in autosomal recessive non-syndromic intellectual disability and developmental and epileptic encephalopathy 15.

NR:

description
CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913599.2 True 1918 mRNA 0.48 13 16534768 16586244
XM_034312433.1 False 1860 mRNA 0.48 13 16534768 16586243
XM_034312439.1 False 1854 mRNA 0.48 12 16534768 16586246
XM_034312442.1 False 1805 mRNA 0.48 12 16534768 16586242
XM_034312444.1 False 1798 mRNA 0.48 11 16534768 16586244

Neighbor

gene id symbol gene type direction distance location
LOC113523777 artn coding downstream 15610 16491681 ~ 16519158 (-)
rad54l rad54l coding downstream 45839 16476425 ~ 16488929 (-)
LOC113531657 LOC108272136 coding downstream 80202 16436840 ~ 16454566 (-)
prkcda LOC108271968,LOC108440644,LOC107582675,LOC103030273,LOC107667398,LOC107721176,LOC107673500,LOC107712078 coding downstream 104672 16419260 ~ 16430096 (-)
ddi2 ddi2,LOC102794950,LOC107721177,LOC107673502,LOC107667352 coding downstream 117949 16406576 ~ 16416819 (-)
kdm4aa kdm4aa,kdm4a,LOC108412690 coding upstream 3101 16589347 ~ 16622597 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding upstream 39408 16625654 ~ 16832868 (-)
szt2 szt2 coding upstream 480109 17066355 ~ 17169352 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding upstream 600399 17186645 ~ 17191459 (-)
LOC113536221 NA coding upstream 611743 17197989 ~ 17203249 (-)
G28537 NA non-coding downstream 44853 16462102 ~ 16489915 (-)
G28508 NA non-coding downstream 175247 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 205347 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 268013 16266556 ~ 16266755 (-)
G28384 NA non-coding downstream 269608 16264924 ~ 16265160 (-)
G29119 NA non-coding upstream 467842 17054088 ~ 17054656 (-)
G29167 LOC108272186 non-coding upstream 807212 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 808520 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 837625 17423871 ~ 17429778 (-)
G29174 NA non-coding upstream 847207 17433453 ~ 17434168 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 399053 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1039559 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1073767 15456635 ~ 15461001 (-)
G27843 NA other downstream 1235749 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1658778 14872948 ~ 14875990 (-)
G29158 NA other upstream 686709 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 886084 17472330 ~ 17529315 (-)
G29263 NA other upstream 1362911 17949157 ~ 17949718 (-)
G29279 NA other upstream 1484741 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1561982 18148228 ~ 18195628 (-)

Expression


Co-expression Network