Gene
RNA
| Item | Value |
|---|---|
| gene id | kif1aa |
| gene name | kif1a,kif1aa,LOC108427666,LOC107593169 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 18988003 ~ 19049750 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| kif1aa | Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Predicted to be involved in cytoskeleton-dependent intracellular transport; microtubule-based movement; and vesicle-mediated transport. Predicted to be located in cytoplasm. Predicted to be part of kinesin complex. Predicted to be active in axon; dendrite; and microtubule. Human ortholog(s) of this gene implicated in NESCAV syndrome; hereditary sensory neuropathy; hereditary sensory neuropathy type 2C; hereditary spastic paraplegia; and hereditary spastic paraplegia 30. Orthologous to human KIF1A (kinesin family member 1A). |
| kif1a | Enables identical protein binding activity. Predicted to be involved in several processes, including dense core granule cytoskeletal transport; regulation of dendritic spine development; and regulation of dendritic spine morphogenesis. Predicted to be located in neuron projection and neuronal dense core vesicle. Predicted to be extrinsic component of neuronal dense core vesicle membrane. Predicted to be part of kinesin complex. Predicted to be active in axon; dendrite; and microtubule. Implicated in NESCAV syndrome; hereditary sensory neuropathy; hereditary sensory neuropathy type 2C; hereditary spastic paraplegia; and hereditary spastic paraplegia 30. |
| description |
|---|
| PREDICTED: kinesin-like protein KIF1A isoform X8 |
| id | description |
|---|---|
| K10392 | KIF1; kinesin family member 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026913997.2 | True | 9959 | mRNA | 0.46 | 50 | 18988003 | 19049750 |
| XM_026914006.2 | False | 9956 | mRNA | 0.46 | 50 | 18988003 | 19049750 |
| XM_026914014.2 | False | 9937 | mRNA | 0.46 | 50 | 18988004 | 19049750 |
| XM_026914016.2 | False | 9932 | mRNA | 0.46 | 50 | 18988003 | 19049750 |
| XM_026914022.2 | False | 9932 | mRNA | 0.46 | 49 | 18988003 | 19049750 |
| XM_026914030.2 | False | 9914 | mRNA | 0.46 | 49 | 18988003 | 19049750 |
| XM_026914038.2 | False | 9910 | mRNA | 0.46 | 49 | 18988004 | 19049750 |
| XM_026914048.2 | False | 9890 | mRNA | 0.46 | 50 | 18988003 | 19049750 |
| XM_026914056.2 | False | 9844 | mRNA | 0.46 | 49 | 18988004 | 19049750 |
| XM_026914064.2 | False | 9661 | mRNA | 0.46 | 49 | 18988004 | 19049750 |
| XM_026914073.2 | False | 9639 | mRNA | 0.46 | 49 | 18988005 | 19049750 |
| XM_026914081.2 | False | 9636 | mRNA | 0.46 | 49 | 18988005 | 19049750 |
| XM_026914090.2 | False | 9612 | mRNA | 0.46 | 48 | 18988005 | 19049750 |
| XM_026914099.2 | False | 9594 | mRNA | 0.46 | 48 | 18988005 | 19049750 |
| XM_026914107.2 | False | 9591 | mRNA | 0.46 | 48 | 18988005 | 19049750 |
| XM_026914116.2 | False | 9525 | mRNA | 0.46 | 48 | 18988005 | 19049750 |
| XM_026914125.2 | False | 9522 | mRNA | 0.46 | 48 | 18988005 | 19049750 |
| XM_026914133.2 | False | 9498 | mRNA | 0.46 | 47 | 18988005 | 19049750 |
| XM_034312608.1 | False | 9567 | mRNA | 0.46 | 47 | 18988005 | 19049750 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| atg4b | atg4b | coding | upstream | 30223 | 18951689 ~ 18957780 (+) |
| farp2 | farp2 | coding | upstream | 70997 | 18858439 ~ 18917006 (+) |
| LOC113527312 | NA | coding | upstream | 130841 | 18841437 ~ 18857162 (+) |
| dzip1l | LOC108271535 | coding | upstream | 373178 | 18600959 ~ 18614825 (+) |
| LOC113536767 | LOC108272161 | coding | upstream | 574048 | 18298375 ~ 18413955 (+) |
| scly | scly | coding | downstream | 2372 | 19052122 ~ 19060672 (+) |
| klhl30 | klhl30,LOC107696751,LOC107753621,LOC107752665,LOC107694118 | coding | downstream | 40134 | 19089884 ~ 19096027 (+) |
| crocc2 | LOC108272137 | coding | downstream | 47987 | 19097737 ~ 19152457 (+) |
| sned1 | sned1,LOC106560635,LOC107753672,LOC107694110 | coding | downstream | 104327 | 19154077 ~ 19196248 (+) |
| ryk | ryk,LOC107752642,LOC107696766,LOC107694116 | coding | downstream | 148051 | 19197801 ~ 19250494 (+) |
| G29561 | sox14,LOC103365676,LOC100695210 | non-coding | upstream | 296996 | 18688653 ~ 18691007 (+) |
| LOC113530672 | NA | non-coding | upstream | 520683 | 18464884 ~ 18467320 (+) |
| LOC113536874 | NA | non-coding | upstream | 627968 | 18358202 ~ 18360035 (+) |
| G29281 | znf326 | non-coding | upstream | 902359 | 18083719 ~ 18085644 (+) |
| G29106 | NA | non-coding | upstream | 1223230 | 17694754 ~ 17764773 (+) |
| G29640 | NA | non-coding | downstream | 476 | 19050226 ~ 19050438 (+) |
| G29641 | NA | non-coding | downstream | 1074 | 19050824 ~ 19051043 (+) |
| G29656 | NA | non-coding | downstream | 142799 | 19192549 ~ 19195409 (+) |
| G29674 | NA | non-coding | downstream | 150565 | 19200315 ~ 19202099 (+) |
| G29792 | NA | non-coding | downstream | 209298 | 19259048 ~ 19259266 (+) |
| boka | bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 | other | upstream | 39266 | 18932683 ~ 18948737 (+) |
| G29569 | hdlbpa,hdlbp,LOC107694132,LOC107733253 | other | upstream | 152282 | 18774770 ~ 18835721 (+) |
| trnai-aau | NA | other | upstream | 170528 | 18817402 ~ 18817475 (+) |
| tomm6 | tomm6 | other | upstream | 2586892 | 16398245 ~ 16401111 (+) |
| mustn1a | LOC108272082,LOC108439813 | other | upstream | 2805694 | 16181171 ~ 16182309 (+) |
| LOC113533886 | espnl | other | downstream | 11347 | 19061097 ~ 19087211 (+) |
| smx5 | lsm2,LSM2,smx5 | other | downstream | 484595 | 19534345 ~ 19537197 (+) |
| LOC113543059 | c11h1orf146 | other | downstream | 950296 | 20000046 ~ 20020226 (+) |
| dlg1 | dlg1,LOC108271975,LOC108427717,LOC107738730 | other | downstream | 1487223 | 20536973 ~ 20658080 (+) |
| insl5a | insl5 | other | downstream | 1965088 | 21014838 ~ 21017867 (+) |
