LOC113526892


Basic Information

Item Value
gene id LOC113526892
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6666938 ~ 6667705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914327.2
GTCCTCTTCATACATATGGTTGTGAATGACATGATCCAGCTGACAATTGCTGTGATACTTCACCttacatcatacattttttatataattaatgtcTCTTTCTGTTGTTTCCTTTTAATGATTGCAGTATTCACCACCCTCAACACTCCACTGAATCTTGCTGGTATGGCCATAGAACGCTATATAGCTATCTGTAACCCATTATACCACAGACAGATCTGTACTGTGCGAAGGACATATATCTTCATCAGCCTTATCTGGTTCCTGGGTTCAGTTCCCATTCTGCCAGATCTGTTTATTCTTGTAGCCACTGAGCCTTCAGAATTCTTTTATTCTGCAATTATCTGCAATCGGGACACCGTGTTCCGCCACCCATATCTAGTAGAAAAAAAGAACGTCTCACATCTGGTCTACCTATTTTTTGTCTGGCTTACTTTGGTGTATACATACTTCAAGATCATTTTTGCTGCCAAGACTGCTGGCTCACATGCCAGGAAGGCTCGCAACACTATCATCTTACATGGGATGCAACTTGTGCTGTGTATGTTCACGTACATTGGCCCACCACTTGAAAGCTTCTtcacttctctttttcctttgtttaCATCTGAactaaaatacataaatttcCTCTTTGTCCATGTTTTGCCAAGATTTTTAAGTCCCATTATATATGGGTGGAGAGACCAGATGTTGTCATCATATCTGAAAAGGGATTTGTTGTGCaataagaagaaaagaagtcaaataaaaacacaatcatcCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914327.2 True 768 mRNA 0.39 1 6666938 6667705

Neighbor

gene id symbol gene type direction distance location
LOC113526899 NA coding upstream 12027 6653982 ~ 6654911 (+)
LOC113526908 NA coding upstream 26908 6639083 ~ 6640030 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding upstream 29389 6636608 ~ 6637549 (+)
matn4 matn4,LOC108412935,LOC107696469 coding upstream 45258 6599357 ~ 6621680 (+)
esyt1b LOC108271768 coding upstream 361769 6247776 ~ 6305169 (+)
LOC117596064 LOC108271622,LOC108271602,LOC108435678 coding downstream 5547 6673252 ~ 6674193 (+)
LOC113526885 LOC108271621,LOC108435693,LOC103036533 coding downstream 13306 6681011 ~ 6682780 (+)
LOC113526877 LOC108271619 coding downstream 20589 6688294 ~ 6689235 (+)
LOC113526867 NA coding downstream 26159 6693864 ~ 6694805 (+)
LOC113526859 NA coding downstream 46890 6714595 ~ 6715524 (+)
G22683 NA non-coding upstream 15545 6651105 ~ 6651393 (+)
G22673 NA non-coding upstream 43489 6623243 ~ 6623449 (+)
G22621 NA non-coding upstream 108937 6557791 ~ 6558001 (+)
G22598 NA non-coding upstream 165487 6501220 ~ 6501451 (+)
G22592 NA non-coding upstream 183790 6481972 ~ 6483148 (+)
G22765 NA non-coding downstream 132371 6800076 ~ 6800790 (+)
G22931 NA non-coding downstream 375870 7043575 ~ 7043782 (+)
G23115 NA non-coding downstream 658658 7326363 ~ 7370530 (+)
LOC117599372 NA non-coding downstream 673604 7341309 ~ 7343059 (+)
G23258 NA non-coding downstream 985326 7653031 ~ 7653288 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 439777 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 617033 6036714 ~ 6049905 (+)
tmem74b NA other upstream 690936 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 910250 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 1163707 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 1237893 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1740100 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 2329229 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2783220 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 2924236 9591941 ~ 9603506 (+)

Expression


Co-expression Network