LOC113526899


Basic Information

Item Value
gene id LOC113526899
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6653982 ~ 6654911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914339.1
ATGAACACGAGTCGGGATGCATTTGAAGATGCATTTATAAAGAATTTAATATCAGTTGGATTAGGTGTCATAATAACCTACATCAATGGCATTTtcgtgtttgttttttttagaactCCAATTTTCTACACTGACCCAAGATATATTCTATACATTCACCTTGTAATCAATGACATCATTATGCTAGTCATATCAGTTTCTCTGCATGTCATGACTTACACTGTACCACTTGTCAATGTCACAGTCTGCAGTATTCTCCTTCTTTTGGTTTCAACAACCTCAGACAACACTGCACTGAATCTGGCTGCAATGGCCTTGGAACGATACACTGCCATCTGCAAACCGCTGCATCACCCTCAGATCTGCACAGTGAAAAGGACCTACATCTGCATTGGTTTGATATGGCTTCTTTCCTTTGTGCCTGCGCTAACAGACATCATCATTACTTTACTGAAACAACCTATCAGTTTTTTCTTGACATCAAGTATGTGCTACAGCAAGAACCTTTTTGGCTCCAATGAGCACCTCATCAAAACAATCTTTATACAGGCACTGTATTTGTCAACTGTGTGCATGACGCTGGTTTTTACTTACTTCAAGGTTTTTCAGGCAGCTAATACTGCAACTACCGATCAGGTTATGGCCAGAAAAGCCCAAAACACTATTCTTCTTCATGGCATACAGCTCCTTCTCTGCATGCTTGCTTATGTCACaccatttataacattttttttcttagaattgTTCCCTAAATATAGAAGTACAATTATGTTCACCTCATATCTATTGTCTAATATATTTCCAAGACTACTCAGTCCTCTTATTTATGGAGTCCGAGatcaaaaaatgtttaaatatgttagCACATATTTGACATTTAGTCAGTTTAACACACAGGTTGGACCAGCAAGCAAGGAACCAAAGTCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914339.1 True 930 mRNA 0.38 1 6653982 6654911

Neighbor

gene id symbol gene type direction distance location
LOC113526908 NA coding upstream 13952 6639083 ~ 6640030 (+)
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding upstream 16433 6636608 ~ 6637549 (+)
matn4 matn4,LOC108412935,LOC107696469 coding upstream 32302 6599357 ~ 6621680 (+)
esyt1b LOC108271768 coding upstream 348813 6247776 ~ 6305169 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding upstream 473457 6159337 ~ 6180525 (+)
LOC113526892 NA coding downstream 12027 6666938 ~ 6667705 (+)
LOC117596064 LOC108271622,LOC108271602,LOC108435678 coding downstream 18341 6673252 ~ 6674193 (+)
LOC113526885 LOC108271621,LOC108435693,LOC103036533 coding downstream 26100 6681011 ~ 6682780 (+)
LOC113526877 LOC108271619 coding downstream 33383 6688294 ~ 6689235 (+)
LOC113526867 NA coding downstream 38953 6693864 ~ 6694805 (+)
G22683 NA non-coding upstream 2589 6651105 ~ 6651393 (+)
G22673 NA non-coding upstream 30533 6623243 ~ 6623449 (+)
G22621 NA non-coding upstream 95981 6557791 ~ 6558001 (+)
G22598 NA non-coding upstream 152531 6501220 ~ 6501451 (+)
G22592 NA non-coding upstream 170834 6481972 ~ 6483148 (+)
G22765 NA non-coding downstream 145165 6800076 ~ 6800790 (+)
G22931 NA non-coding downstream 388664 7043575 ~ 7043782 (+)
G23115 NA non-coding downstream 671452 7326363 ~ 7370530 (+)
LOC117599372 NA non-coding downstream 686398 7341309 ~ 7343059 (+)
G23258 NA non-coding downstream 998120 7653031 ~ 7653288 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 426821 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 604077 6036714 ~ 6049905 (+)
tmem74b NA other upstream 677980 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 897294 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 1150751 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 1250687 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1752894 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 2342023 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2796014 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 2937030 9591941 ~ 9603506 (+)

Expression


Co-expression Network