LOC113526908


Basic Information

Item Value
gene id LOC113526908
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6639083 ~ 6640030 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914353.2
ATGAACTCCTCCATGAATGGAGTAAGTAGGCAGGAAAGCTTTGAGGAAGTTTTCAGCAAAATATTTGTAAGTGTTCTTCTTGGGTTCATCATCATTTGTATCAATGGATCATTTGTTTTCACCTTCTTCAAGAGCTCAGTTTTTCATAATAATCCAAGATACATTTTGTACATACATTTGGTTATCAATGACATGATTATGGTTGGTATGTCTGTGGCACTTCTGGTAATGGTATATACATGGAGGAATGTAAGCATTTCTTCTTGTTGTGTATTAGTAATCATAGCTTCAGCCACTCAGAAAAACACACCACTAAACTTGGCAGCTATGGCAATAGAGCGTTACATTGCCATCTGTAAACCTTTGCATCATTCTCAGATCTGTACCGTGCACAAAACCTTCATTCTTATTGTTTTCATATGGGGAGTTGGACTTATTCCTCCACTGACGGACTTGGTTATTTCTGCCATCCTATTtcctttgttcatttttaacactgttaCTGTCTGCTCTTCATCATTTCTGTACAACACTGTTTACCATGATCAGAGGAAGCAAGCTACACAGGCAATTTACACATCCTTTGTGTGGCTTGTTCTTGTCTACACTTATTGTAGGGTGCTGATTGCAGCCAGAAAGATGGCAAGTGACAAGGAATCTATTAAAAAAGCCAAGAGCACAATCCTTTTGCATGGAGTGCAGCAATTGCTCTGTATGTTGTCCTTTACCCCTCCCGTGTTAGACTTTGTTTTTGTTCGTATTATGCCTACTCAATGGACAAAGATTAGTTATTATGCTTATTTGATAACAAACATCATACCACGCTTGCTTAGTCCACTAATTTATGGTATTCGAGATCAGACATTCGTCAAACACTTGAACAGAAATTTCTCATGCAGagtgttcattttaaaagtaGAATCAGACAAAAGCGCAATCACAAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914353.2 True 948 mRNA 0.38 1 6639083 6640030

Neighbor

gene id symbol gene type direction distance location
or134-1 LOC108271602,LOC108271622,LOC108435678,LOC103033030 coding upstream 1534 6636608 ~ 6637549 (+)
matn4 matn4,LOC108412935,LOC107696469 coding upstream 17403 6599357 ~ 6621680 (+)
esyt1b LOC108271768 coding upstream 333914 6247776 ~ 6305169 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding upstream 458558 6159337 ~ 6180525 (+)
ripor3 LOC108271800,LOC107596833 coding upstream 690631 5889581 ~ 5948452 (+)
LOC113526899 NA coding downstream 13952 6653982 ~ 6654911 (+)
LOC113526892 NA coding downstream 26908 6666938 ~ 6667705 (+)
LOC117596064 LOC108271622,LOC108271602,LOC108435678 coding downstream 33222 6673252 ~ 6674193 (+)
LOC113526885 LOC108271621,LOC108435693,LOC103036533 coding downstream 40981 6681011 ~ 6682780 (+)
LOC113526877 LOC108271619 coding downstream 48264 6688294 ~ 6689235 (+)
G22673 NA non-coding upstream 15634 6623243 ~ 6623449 (+)
G22621 NA non-coding upstream 81082 6557791 ~ 6558001 (+)
G22598 NA non-coding upstream 137632 6501220 ~ 6501451 (+)
G22592 NA non-coding upstream 155935 6481972 ~ 6483148 (+)
G22582 NA non-coding upstream 176832 6458924 ~ 6462251 (+)
G22683 NA non-coding downstream 11075 6651105 ~ 6651393 (+)
G22765 NA non-coding downstream 160046 6800076 ~ 6800790 (+)
G22931 NA non-coding downstream 403545 7043575 ~ 7043782 (+)
G23115 NA non-coding downstream 686333 7326363 ~ 7370530 (+)
LOC117599372 NA non-coding downstream 701279 7341309 ~ 7343059 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 411922 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 589178 6036714 ~ 6049905 (+)
tmem74b NA other upstream 663081 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 882395 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 1135852 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 1265568 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1767775 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 2356904 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2810895 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 2951911 9591941 ~ 9603506 (+)

Expression


Co-expression Network