LOC113527565


Basic Information

Item Value
gene id LOC113527565
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16317108 ~ 16320572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915510.2
ATCAGCTTAGTCAtagaaaaatgatatgaaagtGCTTTGTCACTCTTATAGTGCAGGATGTTaataccagtgtgtgtgtgagcacagcCCGCTGTTTGTATTGTCTGCCTTATCAGTTCCTGAAagtccttccttctttcttgcTTCGCACCTGTTTGGCTTGACGTCTGCAATGGAATTGAGGTTACTGAATAATAGGAAGGTAAGGAGGCAGGTAGGGCAAAATTTCTCTTAGTGGAGAGGCAGAAATAATAATAGCTTCACAGTCCTGTTCATGTCAGATGTGCACACAGTGGCTAAAGTATAGAAACAAAATAGTGGACAGAAGGAGTACGCTCGTCAGATGATTTTATACAGTGAGACGGAGCTGTTTGGCCaattgtgaaacaaaacaagtctACGGAATTTGTTCCAAGGGAACTGGCACAGAAAGAATTACACAACGTTTACTAATCTCTAACGGTTCCTTACACATTTGTACAGAAGACAGCAAGATGCAGGAACCTGAGGTATTACCAACAACAACGTCCAATGCAACCTCGGACATACCCGAGACAGTTCTTCCTAAAGAAGAGGACCAAGTCTGGGATGCAGCTCCAGAATGTTCCATTTGCTTCACCTCATATGATAACACCTTTAAGACACCTAAAGTTCTGCAGTGCAATCACACATTCTGTCTGGAGTGCCTGTCTCGCTTTTTAGCTGTTTCACCAGATCAGAAAGGCAAACAGATTAACTGCCCCCTTTGCAGACAACCAACTTCTGTGCCTGAAAATGGTCCACCAGCCCTGACCACCAGCCAGGAGGTTCTGGGGCAACTGCCCAGCCACCAGCAGCAAGAGGAACATGTATGGCTAGATGGAGAGAGGCTCTGCTACTCAAATCCAGGGACACCCAATGGTGTCTGCATCGACATTGGGGGTAGCAAGCAACAGAATGAGAACAGACAGGAGGAAGCAGAGAATAATAGGAACAGACGGGGGAATTGCATGGGTCTGTTCAAAAGGTGGCAGCGAATACTAATCTTCCTATTGGTGATGATCATACTGATCATCATAGTCATCTGGCCCATCCAGTGCGTCTTCAGCCGGGGTTTGACATCAGGCTGCTTCAGGCAGGACGAGCCCTTGCCGATCGTCCCTACAGCTTCAACCAGCACAGATAGGTGAATGTTTCCAGGACTTAGTTCTTCTGGTGAACCTGCAGTGAGCTTGACTTTCGGATTTAAATGCAAACTTACTCAGGAATATTCAAAGACAGTGTCATAGTCATGTAATGATTGCAATCCCAGTCTTCCACAATAATGGAGATTGCTACATCCTGGACATTATGTACTCTGCCATACAGCTTAAGCTGAAGTTTTTGGGAGTTTCATCTATATTTTTCATTGCAGTCTGAAAAATAGAAGATTAATATTGCTGCTAAAATCAATTGAGCCAAAaaatcaacacaacacaaattGTTATCGTTAGATGAGGAGTGCTTTGGTTGAAACCTTAAATTAGTTTGTCTTTCTGGTCTAGTTATGACAAAACCTCAGTCATTTGAAGTTGATAGCTTTGCTGCTGGAAATCAATATTATAATTCAGATTTTGGACaaatttggaaaataaaaatacaggtACAGTAAATGTTGCtatatgtattataatgtacagtacacatacacaaaaatgtCCTTTTTGCTTTGGATTGTACTAGAGGTGTTATGAGCATTACTATCCATTTCACTGTACTTTAAgtatgacttaaaaaaaaaattaaaaataaaaattaattaaatagctACCCCCATGGAAAGGTGTACATAAAAGCAGCACATATATTCACTATTTTGAAATGAAGACAGTAAGACGGTATTCCTAGGAATGTATCTGTATTATACGCTCTACATTAtggtttatatttacagcatttatccAGAATGACTTACAgcagtgctttgtagtctccatGGAAAACACCCTCATGCTAGTGCAAATAGGCCACTGTGTAAGAATATTAATCTAAGACCATGTAACTGAGAAAGTATAGTACATAGTATAGGATCTAGTGTTTTTTACAGTAGTAATTTTATTGCTAAAGTTGCAGGTTAATGCTTTTATTCAGTCACTCAGCCCTTCATTCAAGGAGGAGGAATGTATTCCATCACTTTAGTGCCAATACGAAAAAAGAGTCTTGATTTTTGTGACTTCCTTGTATTTTGAGGGATGGTGGGTCAAGATGAGCCATGCTTCAAGTCATATGTTTGAATTATATGTTACTAAGAAGTATCTTCCAGATTTAAGAACAAATACTACTGTACGCTAACCCAAGGGTACATTACTGATAGGTCATGtgattttattaaatcacaatATTTTGCCTCCTGGTGTGCTCCTCCCACAATCCATGATTTCTCCATTTTCTAAAAGaaacatgctatatataaacaaaagctACCTGCCTAATTATATACTTAAATGATGTGTTAGGTAATATTACCTATCAGGGTATGTCACTgctttacaaatatttatgaacGGTTAGCATGTGGAAATGTAAATGCTCCAGGTTGTGTTATGTATGTACTAAAATGTTGACAGTGTTGTAAAGATGGAGGCCCTATGCTACATAGAAATATgttgctatatatatattaacattacTCTCAGTTTTGTTATTGACTATAATGCCAGTTCCAAGTTTTCTTTGAATTTGAATCATCAAggaaataaaaccataaaaatatGATTCCTGTGAAAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915510.2 True 2748 mRNA 0.39 2 16317108 16320572

Neighbor

gene id symbol gene type direction distance location
c2h1orf159 c11h1orf159 coding upstream 3864 16306061 ~ 16313244 (+)
akap14 akap14 coding upstream 14652 16301268 ~ 16302456 (+)
kbtbd12 kbtbd12,LOC107721181,LOC107712091,LOC107673613,LOC107667403 coding upstream 28466 16283953 ~ 16288642 (+)
p4htm p4htm,LOC108440486 coding upstream 48529 16259432 ~ 16268579 (+)
myhb myhb,LOC108271865,LOC108440470,LOC107721187,LOC108254796,LOC107568178,LOC108443910,LOC107667337 coding upstream 58677 16245307 ~ 16258431 (+)
si:ch211-157b11.14 LOC108271613 coding downstream 428 16321000 ~ 16328152 (+)
ppil1 ppil1,LOC107667353,LOC107673584 coding downstream 43099 16363671 ~ 16365937 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354 coding downstream 70840 16391412 ~ 16394007 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding downstream 139829 16460401 ~ 16463536 (+)
lrrc41 lrrc41 coding downstream 144371 16464943 ~ 16475146 (+)
G28361 NA non-coding upstream 47556 16268709 ~ 16269552 (+)
G28287 NA non-coding upstream 161864 16154986 ~ 16155244 (+)
G28162 NA non-coding upstream 193968 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 194776 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 210836 16106043 ~ 16106272 (+)
G28402 LOC108271943 non-coding downstream 12879 16333451 ~ 16334652 (+)
G28404 NA non-coding downstream 15620 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 25073 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 37510 16358082 ~ 16361347 (+)
G28446 NA non-coding downstream 115549 16436121 ~ 16440771 (+)
mustn1a LOC108272082,LOC108439813 other upstream 134799 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 213860 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 526664 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 1012614 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2811104 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 77673 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2454198 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2496830 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2612111 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2740525 19061097 ~ 19087211 (+)

Expression


Co-expression Network