hs2st1b (hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611)


Basic Information

Item Value
gene id hs2st1b
gene name hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18501538 ~ 18586226 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916382.2
ATGGGGCTCCTGAGGACCATGATGCCGCCCAAGTTTCAGCTCCTGGCTCTGGTGCTTTTCGCGCTGGCCATGCTCTTCATCGAGAACCAGATCCGCAAACTGGAGGAGTCCCGAGCAAAGCTGGaGCGCACTATGGCCAGGTTGGAGCTACGTGAGGTGGAGCAGAGGCAGAATCATGACACAGTTCGTGAATCCCCTGCGCTTGCAGAGATTGATGATTTGCTCATCATCTACAACCGCGTGCCCAAAACTGGCAGCACGTCCTTCACTAACATCGCCTACGACCTTTGTGCCAAGAACCGCTACCACGTTCTGCATATCAATACCACCAAGAACAATCCAGTCATGTCCCTGCAGGATCAGGTGAGGTTTGTTAGGAATGTGACGTCCTGGAAGGAGATGAAACCAGGGTTTTACCACGGACATGTAGCATACCTGGATTTCTCCAAATTTAGCGTGAGAGCAAAGCCCATCTACATTAACGTAGTGCGTGACCCTATTGAGCGCCTGGTGTCCTACTACTACTTCCTGCGCTTCGGAGATGACTACAGGCCCGGCCTGAGGCGGAGAAAGCAGGGAGACAAAAAGACGTTTGATGAGTGTGTGGCATCAGGGGGATCTGACTGCGCTCCAGAGAAACTCTGGCTGCAGATTCCATTCTTCTGCGGCCATTCCTCCGAGTGCTGgaatgtAGGCAGTCGCTGGGCTCTGGAGCAGGCCAAGTACAACCTGGTGAATGAGTATCTGCTGGTGGGAGTGACGGAGGAGCTGGAGGACTTCATCATGATGTTGGAGGCAGCACTGCCCCGTTTCTTCAGAGGAGCTACTGATCTCTACCGCACAGGTAAGAAGTCCCACCTGAGGAAGACTAGCGAGAAGAAGCCTCCAACTAAAGAGTCCATTTCCAAGCTGCAGCAGTCGGATGTGTGGAAGATGGAGAATGAGTTCTATGAGTTTGCACTCGAGCAGTTCCAGTTCGTCCGCGCTCATGGTGTAAGAGAGAAGGACGGAGAGCTGTTCGTGCTGGCGCAGAACTTCTTCTACGAGAAGATCTACCCAAAAGTGAACTGaaacaggagagagaaagcCATGACTTTTAACCTCTGTATTTTCCATCTTCACCATGGAGGAGGACAAGGAGAGGAGAATGTCTTCAGTAGAAAATGGCATCTGTGGAAATAGAAAAAGAGCTCTTTGTGGATTTATTACCTCCTCAGTCATAGTACAGTGGAGTTCTACTGTATATACGCTATACAGTAGATTACAAAACACTGTTTATTATAGAGATGGAGAAGATGTAAACTATGCCGCGAGCACTGATTACAGGAACTTTTAGAGTACTTTGATGTCCAGTGCTCTTCTTTCTCAGACTTTATGGCAGCCTGGACAAATTTATCACACCTGAAAAAggcatttgtttaaaataattcatttagaATTCCCTAAAAAGAGATAAAGGGTACATTTGAAAGTGAAACTCAACAGGGTGAAAAATGGGTCTACATTTTGTACCAGCCAGCGGCACATTAAATGCACcttccattttattattaagtgttctcaactttttttttccctctttggcATTGTGTTTTTTATGATAGAATGCCAtgtatgtgtttagtgtgaATATTGTACCCCAACAAAAGATCAAGTAGAACTCGTACATAATGCCTGTTTTACGCAGTCGGACCAAATGGCTATAAGAGAAACCAAGTCATAGATGTTGACCTTCAACTTTGGAatgctgagaaaaacaaaagaagaagcaGTACTTGAAGTATTGCACTTTAAAATCCcaatattttctgtttgtttttcagcgTGGTTATAAGGCAGAGGATTTCCAATGGACCACTGAAGAAAACAATCAAGTAACTTGTACTTTTTTATCATCTGAGTGCAGGTAATCAGTCCACTGAGATTTCTAATGAAGAGGGACAGAAGAATGTAGCTGCCTTCAGCTTGGACTGTGGTCCTGTAGCTCCTCGGAGGAACCTTACTGGAGAGGTGATGATCTTTGTGGAGACCCTGTGCTTTTTAGAAGCCCTGgattgtccaaaaaaaaaaaacaaacaacaaaaaagctaGATGTTTTagtcagtgctgtttttttactttgtgttttTGCTACTGTATCTGTAAAGAAGAGCGAGGAGTCTGGGTACAGAGAGATTTGATAGCCAGGAATAGAATTGACTGAAAATCATCTAAACGCCTCCATTTCCCTGACTGTGACATGCACACTCAGATCCTATCTAGCTCCACTTTCAATAGTGCCTTCATAACCAGACGGCCAGCATTCGTTCTCTGAATGGTCAAAAACATCACTCACTTTTCTAGGCCATGTTTTTTTCAGATACCGGCTTTCTTTTTGAGTTTCTGTTGTTAATGTTTTCTTGGTGAAAATTgtctttaatgcattttaataaacccTGAACTGTCATTGA
>XM_026916472.2
AGATGCATCGCTACCTGACTTCACACAGCGACGGTACACCGAGGAATAAAACCCAAGAGCCAGAGGAaaaccgcacacacacatacacacacacatacacacactctctctgagGCAGCAGCATCGCGGAGAGCTCGCGACTGTGGAGCACTTCAGCCAGGCAAAGCACCTGATCCAGTGTTCCGGCTGTGCTCGTCGCGCGCATGTGTGTCTGATCCGCGATTTCTGAGCCTGCATTTGCGGCATGACATGCAGATagatcatcctcatcctcatcatcatcaccatcatcaccatcatcatcctcctgtAGTGTGGTTTAATGGGGCTCCTGAGGACCATGATGCCGCCCAAGTTTCAGCTCCTGGCTCTGGTGCTTTTCGCGCTGGCCATGCTCTTCATCGAGAACCAGATCCGCAAACTGGAGGAGTCCCGAGCAAAGCTGGaGCGCACTATGGCCAGGTTGGAGCTACGTGAGGTGGAGCAGAGGCAGAATCATGACACAGTTCGTGAATCCCCTGCGCTTGCAGAGATTGATGATTTGCTCATCATCTACAACCGCGTGCCCAAAACTGGCAGCACGTCCTTCACTAACATCGCCTACGACCTTTGTGCCAAGAACCGCTACCACGTTCTGCATATCAATACCACCAAGAACAATCCAGTCATGTCCCTGCAGGATCAGGTGAGGTTTGTTAGGAATGTGACGTCCTGGAAGGAGATGAAACCAGGGTTTTACCACGGACATGTAGCATACCTGGATTTCTCCAAATTTAGCGTGAGAGCAAAGCCCATCTACATTAACGTAGTGCGTGACCCTATTGAGCGCCTGGTGTCCTACTACTACTTCCTGCGCTTCGGAGATGACTACAGGCCCGGCCTGAGGCGGAGAAAGCAGGGAGACAAAAAGACGTTTGATGAGTGTGTGGCATCAGGGGGATCTGACTGCGCTCCAGAGAAACTCTGGCTGCAGATTCCATTCTTCTGCGGCCATTCCTCCGAGTGCTGgaatgtAGGCAGTCGCTGGGCTCTGGAGCAGGCCAAGTACAACCTGGTGAATGAGTATCTGCTGGTGGGAGTGACGGAGGAGCTGGAGGACTTCATCATGATGTTGGAGGCAGCACTGCCCCGTTTCTTCAGAGGAGCTACTGATCTCTACCGCACAGGTAAGAAGTCCCACCTGAGGAAGACTAGCGAGAAGAAGCCTCCAACTAAAGAGTCCATTTCCAAGCTGCAGCAGTCGGATGTGTGGAAGATGGAGAATGAGTTCTATGAGTTTGCACTCGAGCAGTTCCAGTTCGTCCGCGCTCATGGTGTAAGAGAGAAGGACGGAGAGCTGTTCGTGCTGGCGCAGAACTTCTTCTACGAGAAGATCTACCCAAAAGTGAACTGa

Function

symbol description
hs2st1b Predicted to enable heparan sulfate 2-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification and heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human HS2ST1 (heparan sulfate 2-O-sulfotransferase 1).

NR:

description
transposase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02513 HS2ST1; heparan sulfate 2-O-sulfotransferase HS2ST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916382.2 True 2450 mRNA 0.44 7 18501538 18585762
XM_026916472.2 False 1393 mRNA 0.53 8 18502917 18586226

Neighbor

gene id symbol gene type direction distance location
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding downstream 36967 18449257 ~ 18464571 (-)
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding downstream 374626 18116405 ~ 18126912 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding downstream 395259 18094167 ~ 18106279 (-)
znf326 znf326 coding downstream 411222 18083721 ~ 18090316 (-)
LOC117599332 NA coding downstream 706187 17794638 ~ 17795351 (-)
LOC113534471 LOC108271530,LOC108427638 coding upstream 29751 18615977 ~ 18623608 (-)
sox14 sox14,LOC103365676,LOC100695210 coding upstream 102372 18688598 ~ 18691082 (-)
hdlbpa hdlbp coding upstream 233831 18820057 ~ 18835789 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding upstream 330399 18916625 ~ 18927201 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding upstream 371547 18957773 ~ 18961671 (-)
G29439 NA non-coding downstream 48562 18452468 ~ 18452976 (-)
G29237 NA non-coding downstream 658718 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 787173 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 863521 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 990083 17487361 ~ 17511455 (-)
G29541 NA non-coding upstream 28131 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 28643 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 47852 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 297758 18883984 ~ 18887011 (-)
G29614 farp2 non-coding upstream 304491 18890717 ~ 18895805 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 305910 18148228 ~ 18195628 (-)
G29279 NA other downstream 428629 18070987 ~ 18072909 (-)
G29263 NA other downstream 551820 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 972223 17472330 ~ 17529315 (-)
G29158 NA other downstream 1221365 17272955 ~ 17280173 (-)
LOC113537624 NA other upstream 207799 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 230033 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 230901 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1417133 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1773496 20359722 ~ 20429325 (-)

Expression


Co-expression Network