zgc:103559 (LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245)


Basic Information

Item Value
gene id zgc:103559
gene name LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18970308 ~ 18976937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916667.2
GCCTGACCTGCGCTTCCGAGCAATTAGCTTATGTGGGCTTCAACgggaaaacatttaaaaatacattcaattGTACATGGTTTCCACAACAGAGTAAGAAGATACACATTCtgtccttttttgtgtgtttatttcttgagAAATAGAAGAGAGAACCTCGAATGTGCAGTAAAGGTCTAATATAAAACCAGCTGTACCGCGGTGATTTACTTGTTGAACTGGCTGCAGCCCTTCTTCACACCGGGGCTTTATAGAGTCTAAACAGCGAGAGAAGCACTGAAATGGAGGCAGGATCCACTGTGAGTGCTGTGAGGAGCTTAAAGGTTTTGATTGGGGATGAGGTTCGACCTGCACTCATCACCATAAAGGAAGGGAAGATTGATAAAATCCTGTCTGATCCAGGTGCTACTGCACGCGCAGGTGGAGAGgtgctggATGTGGGCGACAACGTGGTGATGCCAGGTTTAGTggactgtcatgttcatgttaatgaaccgGGCCGTACTACCTGGGAAGGCTACTGGACTGCAACACAAGCGGCAGCAGCGGGAGGGGTGACTACTATCGTAGACATGCCCCTCAACAGCATACCACCAACCACAAGCCTTGTGAACTTCCATGAAAAGCTACAAGCTGCTACTGGACAGTGTTTTGTGGACACAGCATTCTGGGGAGGCGTTGTCCCTGGAAACCAGCCGGAGCTGAGGCCTATGGTGCAGGCCGGAGTGGCTGGATTTAAGTGCTTTCTCATCCACAGTGGAGTTGATGAATTTCCTCATGTAAGCGAGGAGGAACTGCATGCTGCAATGAAGCAACTCCAGGGCACAGAAAGTGTCTTACTGTTTCATGCAGAGCAGGAGGTCCAGCCACCTCTGGCAGAGGATGGTGATCCATGTGAGTACTCAACATTTCTGAGGTCCAGACCTGATGTCATGGAACTGGAGGCCATTCGGACCGTTACAAAACTCTGCCTGCAGTACCAAGTTCGATGCCACATTGTGCACCTGTCATCAGCCGAGTCTCTGGAGCTGATCCGAGCAGCTCGACAGGCTGGAGCTCCATTAACAGTGGAGACGACACACCACTATCTCACCCTGAACTCAGAGAACATCCCATCAGGGGCCACACAGTTCAAGTGCTGTCCTCCCATTCGGGACAGAGCCAACCAGGAGCAGCTGTGGTCTGCACTAAGAGCTGGTGATATAGACATGGTCGTATCTGATCACTCTCCCTGCACCCCTGACCTGAAGCGCTTGGACACTGGGGATTTCACCCAGGCATGGGGCGGCATTTCTTCTCTGCAGTTCGGCCTGCCTCTGTTTTGGACCTCAGCTCATAAGAGAGGTTTTGCTTTTCCTGATGTAGTCAAACTCCTGTGCAAAGAACCTGCACGTCTCTGTTGCCTTGACAACCAAAAAGGCAGTCTCATGCCAGGTCACGATGCAGACTTAGTCATCTGGGATCCAAAGAAGGAATTTATAGTAAAAGAGGAAAACATACATCACAAAAATAAACTAACCCCATATCTTGGTCTGACCTTATGCGGGGAGGTAAAGGGTACCATAGTTCGGGGAAAACTTGTGTACGTCAATGGCTCATTTAGTCCTCAGCCACTAGGACAGAGTTTACTCATAAATCAGACTCTAAACCGGGCTTCCCTGTGAACCTCCCTCACTTCAACCACTTACTGCACATCCCAAGATTTCTTCCAGTCTTTCCTACATTTTTGAGGagtatttctttctcttcatgGGTGCTGTAAGGATGCGGGGCTATTGATTTAAGGGCATGTAAAGCCCACTATGACATGCTTGTGATTTTGGACtgtgtaaattaaatttgattttacTTAAAA
>XM_026916676.2
CTTAAAGGTTTTGATTGGGGATGAGGTTCGACCTGCACTCATCACCATAAAGGAAGGGAAGATTGATAAAATCCTGTCTGATCCAGGTGCTACTGCACGCGCAGGTGGAGAGTGTGCagtatgtgctgtgtgtgtaggtgctggATGTGGGCGACAACGTGGTGATGCCAGGTTTAGTggactgtcatgttcatgttaatgaaccgGGCCGTACTACCTGGGAAGGCTACTGGACTGCAACACAAGCGGCAGCAGCGGGAGGGGTGACTACTATCGTAGACATGCCCCTCAACAGCATACCACCAACCACAAGCCTTGTGAACTTCCATGAAAAGCTACAAGCTGCTACTGGACAGTGTTTTGTGGACACAGCATTCTGGGGAGGCGTTGTCCCTGGAAACCAGCCGGAGCTGAGGCCTATGGTGCAGGCCGGAGTGGCTGGATTTAAGTGCTTTCTCATCCACAGTGGAGTTGATGAATTTCCTCATGTAAGCGAGGAGGAACTGCATGCTGCAATGAAGCAACTCCAGGGCACAGAAAGTGTCTTACTGTTTCATGCAGAGCAGGAGGTCCAGCCACCTCTGGCAGAGGATGGTGATCCATGTGAGTACTCAACATTTCTGAGGTCCAGACCTGATGTCATGGAACTGGAGGCCATTCGGACCGTTACAAAACTCTGCCTGCAGTACCAAGTTCGATGCCACATTGTGCACCTGTCATCAGCCGAGTCTCTGGAGCTGATCCGAGCAGCTCGACAGGCTGGAGCTCCATTAACAGTGGAGACGACACACCACTATCTCACCCTGAACTCAGAGAACATCCCATCAGGGGCCACACAGTTCAAGTGCTGTCCTCCCATTCGGGACAGAGCCAACCAGGAGCAGCTGTGGTCTGCACTAAGAGCTGGTGATATAGACATGGTCGTATCTGATCACTCTCCCTGCACCCCTGACCTGAAGCGCTTGGACACTGGGGATTTCACCCAGGCATGGGGCGGCATTTCTTCTCTGCAGTTCGGCCTGCCTCTGTTTTGGACCTCAGCTCATAAGAGAGGTTTTGCTTTTCCTGATGTAGTCAAACTCCTGTGCAAAGAACCTGCACGTCTCTGTTGCCTTGACAACCAAAAAGGCAGTCTCATGCCAGGTCACGATGCAGACTTAGTCATCTGGGATCCAAAGAAGGAATTTATAGTAAAAGAGGAAAACATACATCACAAAAATAAACTAACCCCATATCTTGGTCTGACCTTATGCGGGGAGGTAAAGGGTACCATAGTTCGGGGAAAACTTGTGTACGTCAATGGCTCATTTAGTCCTCAGCCACTAGGACAGAGTTTACTCATAAATCAGACTCTAAACCGGGCTTCCCTGTGAACCTCCCTCACTTCAACCACTTACTGCACATCCCAAGATTTCTTCCAGTCTTTCCTACATTTTTGAGGagtatttctttctcttcatgGGTGCTGTAAGGATGCGGGGCTATTGATTTAAGGGCATGTAAAGCCCACTATGACATGCTTGTGATTTTGGACtgtgtaaattaaatttgattttacTTAAAA
>XM_034310948.1
TGCGCTTCCGAGCAATTAGCTTATGTGGGCTTCAACgggaaaacatttaaaaatacattcaattGTACATGGTTTCCACAACAGAgtgctggATGTGGGCGACAACGTGGTGATGCCAGGTTTAGTggactgtcatgttcatgttaatgaaccgGGCCGTACTACCTGGGAAGGCTACTGGACTGCAACACAAGCGGCAGCAGCGGGAGGGGTGACTACTATCGTAGACATGCCCCTCAACAGCATACCACCAACCACAAGCCTTGTGAACTTCCATGAAAAGCTACAAGCTGCTACTGGACAGTGTTTTGTGGACACAGCATTCTGGGGAGGCGTTGTCCCTGGAAACCAGCCGGAGCTGAGGCCTATGGTGCAGGCCGGAGTGGCTGGATTTAAGTGCTTTCTCATCCACAGTGGAGTTGATGAATTTCCTCATGTAAGCGAGGAGGAACTGCATGCTGCAATGAAGCAACTCCAGGGCACAGAAAGTGTCTTACTGTTTCATGCAGAGCAGGAGGTCCAGCCACCTCTGGCAGAGGATGGTGATCCATGTGAGTACTCAACATTTCTGAGGTCCAGACCTGATGTCATGGAACTGGAGGCCATTCGGACCGTTACAAAACTCTGCCTGCAGTACCAAGTTCGATGCCACATTGTGCACCTGTCATCAGCCGAGTCTCTGGAGCTGATCCGAGCAGCTCGACAGGCTGGAGCTCCATTAACAGTGGAGACGACACACCACTATCTCACCCTGAACTCAGAGAACATCCCATCAGGGGCCACACAGTTCAAGTGCTGTCCTCCCATTCGGGACAGAGCCAACCAGGAGCAGCTGTGGTCTGCACTAAGAGCTGGTGATATAGACATGGTCGTATCTGATCACTCTCCCTGCACCCCTGACCTGAAGCGCTTGGACACTGGGGATTTCACCCAGGCATGGGGCGGCATTTCTTCTCTGCAGTTCGGCCTGCCTCTGTTTTGGACCTCAGCTCATAAGAGAGGTTTTGCTTTTCCTGATGTAGTCAAACTCCTGTGCAAAGAACCTGCACGTCTCTGTTGCCTTGACAACCAAAAAGGCAGTCTCATGCCAGGTCACGATGCAGACTTAGTCATCTGGGATCCAAAGAAGGAATTTATAGTAAAAGAGGAAAACATACATCACAAAAATAAACTAACCCCATATCTTGGTCTGACCTTATGCGGGGAGGTAAAGGGTACCATAGTTCGGGGAAAACTTGTGTACGTCAATGGCTCATTTAGTCCTCAGCCACTAGGACAGAGTTTACTCATAAATCAGACTCTAAACCGGGCTTCCCTGTGAACCTCCCTCACTTCAACCACTTACTGCACATCCCAAGATTTCTTCCAGTCTTTCCTACATTTTTGAGGagtatttctttctcttcatgGGTGCTGTAAGGATGCGGGGCTATTGATTTAAGGGCATGTAAAGCCCACTATGACATGCTTGTGATTTTGGACtgtgtaaattaaatttgattttacTTAAAA

Function

NR:

description
PREDICTED: allantoinase, mitochondrial-like

GO:

id name namespace
GO:0000256 allantoin catabolic process biological_process
GO:0050897 cobalt ion binding molecular_function
GO:0004038 allantoinase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01466 allB; allantoinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916667.2 True 1855 mRNA 0.48 11 18970308 18976937
XM_026916676.2 False 1564 mRNA 0.49 11 18970308 18976621
XM_034310948.1 False 1512 mRNA 0.49 11 18970308 18976929

Neighbor

gene id symbol gene type direction distance location
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding downstream 857 18964291 ~ 18969451 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding downstream 8637 18957773 ~ 18961671 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding downstream 43107 18916625 ~ 18927201 (-)
hdlbpa hdlbp coding downstream 134519 18820057 ~ 18835789 (-)
sox14 sox14,LOC103365676,LOC100695210 coding downstream 279226 18688598 ~ 18691082 (-)
im:7152348 NA coding upstream 395493 19372430 ~ 19376164 (-)
trnap-ugg_1 NA coding upstream 403504 19380441 ~ 19380512 (-)
bcl6aa bcl6 coding upstream 567215 19544152 ~ 19552693 (-)
tbc1d23 tbc1d23,LOC107574489 coding upstream 979780 19956717 ~ 19983297 (-)
tomm70a tomm70 coding upstream 1009087 19986024 ~ 19999160 (-)
G29614 farp2 non-coding downstream 74503 18890717 ~ 18895805 (-)
G29612 NA non-coding downstream 83297 18883984 ~ 18887011 (-)
G29551 NA non-coding downstream 335951 18634078 ~ 18634357 (-)
G29542 NA non-coding downstream 354434 18614869 ~ 18615874 (-)
G29541 NA non-coding downstream 355584 18614357 ~ 18614724 (-)
G29678 NA non-coding upstream 7125 18984062 ~ 19049735 (-)
G29793 NA non-coding upstream 282013 19258950 ~ 19259178 (-)
LOC117596148 NA non-coding upstream 406377 19383314 ~ 19385251 (-)
trnap-cgg_1 NA non-coding upstream 409505 19386442 ~ 19386513 (-)
G29905 NA non-coding upstream 427471 19404408 ~ 19404621 (-)
trnap-ugg NA other downstream 153110 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 153496 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 153978 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 774680 18148228 ~ 18195628 (-)
G29279 NA other downstream 897399 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 1026422 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1382785 20359722 ~ 20429325 (-)
lepr lepr other upstream 2304427 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 2472609 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3595495 22572432 ~ 22581943 (-)

Expression


Co-expression Network