dtymk (dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279)


Basic Information

Item Value
gene id dtymk
gene name dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18957773 ~ 18961671 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916714.2
GCCAATAACcctcagaagaagaagaagcattaTCAGGCGGGAACTGAGTTAAAGCAGAACCAGCAAGAGGGTCGTGTTTTGTTTATAGTGTTTTGTTAGAAgtttgtaacattttataaaacgTTTTATAAAGCTATGTCTTGTAGAAGAGGAGCTTTAATCGTGCTGGAGGGAGTGGACAAAGCCGGAAAAACCACCCAGTGTAAGAAGCTTGTTCATGCTCTGCAGCAGAGTGGACGAGCCGCTGAGATGATGAGATTCCCTGacagaacaacacagatTGGGCAGCTGATCAGTTCATACCTGGAGAAAAAGAACAACCTGGAGGACCACACCATACACCTGCTCTTTTCTGCAAACCGCTGGGAGTTGGTGCCGCTAATGAAGAAGAAGCTGGAGCAGGGAATCACCCTGGTGGTGGATCGCTATGCTTTTTCTGGAGTGGCTTTCACCAGTGCCAAACCTGACTTCTCTCTGGAGTGGTGTAAATATCCTGATGTGGGTCTGCCAAAGCCAGACCTTGTGATGTTCCTGCAGCTGAACCCCAGCGTAGCAGCTGAACGTGGGGAGTTTGGAACAGAGCGATACGAGACCAGCACTTTTCAGCGTACAGTACAACAGAGGTTCGAACAACTTATGAAGGACCCATCAGTTAACTGGAAGGTGATTGATGCAACCAGGAGCATAGAAGTAGTACACAATGATATTAACGTGCTGTGTGAGAACACAATTAATACATGTGAGACTCTGCCAATTGGAGAACTCTGGAAATGAACAATATGGAGAATTCCCAGCCAGCTGTGGATATAACAGCGTTTTTAATCACAGTTATACTGTGCACAGAAGTTGCCTGGAAGTAACACTGCTTAAATTGTCCTTTGAAGAACAATATTGTTTTATGTACACAcaaaggtgttcctaataaagtagacagtgagtattttta

Function

symbol description
dtymk Predicted to enable nucleoside diphosphate kinase activity; thymidylate kinase activity; and uridylate kinase activity. Predicted to be involved in dTDP biosynthetic process; dTTP biosynthetic process; and dUDP biosynthetic process. Predicted to be active in cytosol; mitochondrion; and nucleus. Orthologous to human DTYMK (deoxythymidylate kinase).

NR:

description
thymidylate kinase

GO:

id name namespace
GO:0006233 dTDP biosynthetic process biological_process
GO:0004798 thymidylate kinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00943 tmk, DTYMK; dTMP kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916714.2 True 946 mRNA 0.44 5 18957773 18961671

Neighbor

gene id symbol gene type direction distance location
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding downstream 30572 18916625 ~ 18927201 (-)
hdlbpa hdlbp coding downstream 121984 18820057 ~ 18835789 (-)
sox14 sox14,LOC103365676,LOC100695210 coding downstream 266691 18688598 ~ 18691082 (-)
LOC113534471 LOC108271530,LOC108427638 coding downstream 334165 18615977 ~ 18623608 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding downstream 371547 18501538 ~ 18586226 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding upstream 2620 18964291 ~ 18969451 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding upstream 8637 18970308 ~ 18976937 (-)
im:7152348 NA coding upstream 410759 19372430 ~ 19376164 (-)
trnap-ugg_1 NA coding upstream 418770 19380441 ~ 19380512 (-)
bcl6aa bcl6 coding upstream 582481 19544152 ~ 19552693 (-)
G29614 farp2 non-coding downstream 61968 18890717 ~ 18895805 (-)
G29612 NA non-coding downstream 70762 18883984 ~ 18887011 (-)
G29551 NA non-coding downstream 323416 18634078 ~ 18634357 (-)
G29542 NA non-coding downstream 341899 18614869 ~ 18615874 (-)
G29541 NA non-coding downstream 343049 18614357 ~ 18614724 (-)
G29678 NA non-coding upstream 22391 18984062 ~ 19049735 (-)
G29793 NA non-coding upstream 297279 19258950 ~ 19259178 (-)
LOC117596148 NA non-coding upstream 421643 19383314 ~ 19385251 (-)
trnap-cgg_1 NA non-coding upstream 424771 19386442 ~ 19386513 (-)
G29905 NA non-coding upstream 442737 19404408 ~ 19404621 (-)
trnap-ugg NA other downstream 140575 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 140961 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 141443 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 762145 18148228 ~ 18195628 (-)
G29279 NA other downstream 884864 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 1041688 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1398051 20359722 ~ 20429325 (-)
lepr lepr other upstream 2319693 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 2487875 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3610761 22572432 ~ 22581943 (-)

Expression


Co-expression Network