chmp4ba (chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153)


Basic Information

Item Value
gene id chmp4ba
gene name chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5476750 ~ 5489524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917112.2
CTATTACGTCATTACGTGACTCATTCCGCGTGACGAGCTGTCGTCACAGGGCCTGGACAGGGAAGAGTGAGGAGAAACAACAACACATCAAATTCTGTGTGTTCAGTGCAGGGTGCTAGTTTAACGTCACTGCGTTTCTTTTATATACCGGCATACAAACTAGAAGATTTTGCGATCCCCCACTAAAGTTTCACACACGGTTTTACTGTCGTTAAAAGCCAGGATGTCTTTGTTTGGGAAATTGTTTGGTAGCAGTGGCAAAGGAGGTAAAGCTCCCAGTCCTCAGGAGGCTATCCAGCGACTTCGAGATACAGAGGAGATGTTGACGAAGAAACAAgaatttctggaaaaaaagatTGAACAGGAACTGCTCACGGCAAAGCGAAACGgaacaaagaacaaaagagCTGCACTACAAGCATTGAAGCGCAAGAAGCGATATGAGAAGCAGTTGGCTCAGATTGATGGAACATTGTCCACCATTGAGTTCCAGAGGGAGGCGCTGGAGAAtgccaacactaacactgaGGTCATCAAGAACATGGGTTTTGCTGCTAAGGCCATGAAAGCTGCTCATGATAACATGGACATAGACAAAGTTGACGAACTCATGCAGGATATCACAGAGCAGCAGGAGTTGGCACAAGAAATCTCCGATGCAATTTCTAAGCCTGTTGGGTTTGGCGAGGAGTTTGATGAGGATGAGCTGCTGGCTGAATTGGAGGAGTTGGAGCAGGAAGAGCTAGATAAGAACCTGCTAGAGATTGGAGGCACAGAGAATGTACCGCTGCCAAATGTACCCTCCACATCCCTACCTTCTAGACCAGcagcaaagaaaaaagaagaggaggatgatgatgacatGAAGGACCTGGAGGCTTGGGCAGCCAATTAATCCCTGCTGTTGGTCACAAAAACATACCCCCACATCACACGTAAACAGTTGCAGCTGGTCAAACCAGACAGATTTGATGGTTTAGTGCGAAGTTTTTTGGACTGATAAACACTGCAACGATGAAACAAATACTACTACTCAAAATACATCCTGCCACACTTTTAGAATTTCACCACAAGTTATGTCATCAAGCATGATAAATATTAAGCTGCATATCTCTCAATGCTCTTCCTCATTGGTGGACCtagaaaaaagtatgttttttggAAGCCCCTCTATTATGTGAAGTATTTATCCACATCTTGTTCTCAAACACTCCCATGGCAAAGAACCCTGTATAaattatgtgtattattttaaatgggAAAGGAAACAGATTATTCCTATGTccacaaaacatttacattcactTGAAAGGTTTATGATTTATCTGTTTCTTCTTCCCCAACTATTAACACTGGGTTATACAAACACTAATTTCTTTATGAAAATTGCTTTATTGAAAATAGGATTTCTTTGTCCCCTGCTGTATTGAGCATAAAGTAGAAGAGTTCTTGAGTGGAATAGTCAAAACCATGACCAAAGCTCATCAAGCATATTTATGTGCTGGTTTTGAAAAATTCTCTTGAAGTGCCCTCTTTGTAAACAACTTTTGAAACATGTCATGTGAATTACACTTTTCTGATATGCTTGTGTAAGCATGTATCTGAATGACTCTGATATTTAATGCTACTAATGatttcatgatttattttgagAAAGTTCTAGATTCCCAAGGAATGATGTGTCTGCTTTTTAAGTatgaatgtgttttgcaaaTGGGGTTAGGGATACAGATTAAtgtaatgtcattttatttttgcagtgttggtTATGCTTCTGGGTTCATCCTGGTacattggtttgtttgtttttttttttccttagatTTTCTCTTGTTTAAAAGTAACTTTATAAGCAGCAATTTATGACACTTATATGGCATTTAGATTTATTGACATTAGTGTTTATGTGCAAAGCTACTTATCTTTGCTGGTAAATGCAGCTGTCTTCTTTCCCATTTACAGCCTCCCCATCTTGCATTATATTGACATGCCTTTCAGTGTCcttttaacaaaaattaaagGTTTTGTTAAATGAC
>XM_034313088.1
GCCGCTCTATTACGTCATTACGTGACTCATTCCGCGTGACGAGCTGTCGTCACAGGGCCTGGACAGGGAAGAGTGAGGAGAAACAACAACACATCAAATTCTGTGTGTTCAGTGCAGGGTGCTAGTTTAACGTCACTGCGTTTCTTTTATATACCGGCATACAAACTAGAAGATTTTGCGATCCCCCACTAAAGTTTCACACACGGTTTTACTGTCGTTAAAAGCCAGGATGTCTTTGTTTGGGAAATTGTTTGGTAGCAGTGGCAAAGGAGGTAAAGCTCCCAGTCCTCAGGAGGCTATCCAGCGACTTCGAGATACAGAGGAGATGTTGACGAAGAAACAAgaatttctggaaaaaaagatTGAACAGGAACTGCTCACGGCAAAGCGAAACGgaacaaagaacaaaagagCTGCACTACAAGCATTGAAGCGCAAGAAGCGATATGAGAAGCAGTTGGCTCAGATTGATGGAACATTGTCCACCATTGAGTTCCAGAGGGAGGCGCTGGAGAAtgccaacactaacactgaGGTCATCAAGAACATGGGTTTTGCTGCTAAGGCCATGAAAGCTGCTCATGATAACATGGACATAGACAAAGTTGACGAACTCATGCAGGATATCACAGAGCAGCAGGAGTTGGCACAAGAAATCTCCGATGCAATTTCTAAGCCTGTTGGGTTTGGCGAGGAGTTTGATGAGGATGAGCTGCTGGCTGAATTGGAGGAGTTGGAGCAGGAAGAGCTAGATAAGAACCTGCTAGAGATTGGAGGCACAGAGAATGTACCGCTGCCAAATGTACCCTCCACATCCCTACCTTCTAGACCAGcaaagaaaaaagaagaggaggatgatgatgacatGAAGGACCTGGAGGCTTGGGCAGCCAATTAATCCCTGCTGTTGGTCACAAAAACATACCCCCACATCACACGTAAACAGTTGCAGCTGGTCAAACCAGACAGATTTGATGGTTTAGTGCGAAGTTTTTTGGACTGATAAACACTGCAACGATGAAACAAATACTACTACTCAAAATACATCCTGCCACACTTTTAGAATTTCACCACAAGTTATGTCATCAAGCATGATAAATATTAAGCTGCATATCTCTCAATGCTCTTCCTCATTGGTGGACCtagaaaaaagtatgttttttggAAGCCCCTCTATTATGTGAAGTATTTATCCACATCTTGTTCTCAAACACTCCCATGGCAAAGAACCCTGTATAaattatgtgtattattttaaatgggAAAGGAAACAGATTATTCCTATGTccacaaaacatttacattcactTGAAAGGTTTATGATTTATCTGTTTCTTCTTCCCCAACTATTAACACTGGGTTATACAAACACTAATTTCTTTATGAAAATTGCTTTATTGAAAATAGGATTTCTTTGTCCCCTGCTGTATTGAGCATAAAGTAGAAGAGTTCTTGAGTGGAATAGTCAAAACCATGACCAAAGCTCATCAAGCATATTTATGTGCTGGTTTTGAAAAATTCTCTTGAAGTGCCCTCTTTGTAAACAACTTTTGAAACATGTCATGTGAATTACACTTTTCTGATATGCTTGTGTAAGCATGTATCTGAATGACTCTGATATTTAATGCTACTAATGatttcatgatttattttgagAAAGTTCTAGATTCCCAAGGAATGATGTGTCTGCTTTTTAAGTatgaatgtgttttgcaaaTGGGGTTAGGGATACAGATTAAtgtaatgtcattttatttttgcagtgttggtTATGCTTCTGGGTTCATCCTGGTacattggtttgtttgtttttttttttccttagatTTTCTCTTGTTTAAAAGTAACTTTATAAGCAGCAATTTATGACACTTATATGGCATTTAGATTTATTGACATTAGTGTTTATGTGCAAAGCTACTTATCTTTGCTGGTAAATGCAGCTGTCTTCTTTCCCATTTACAGCCTCCCCATCTTGCATTATATTGACATGCCTTTCAGTGTCcttttaacaaaaattaaagGTTTTGTTAAATGAC

Function

symbol description
chmp4b Enables protein homodimerization activity. Involved in several processes, including midbody abscission; mitotic nuclear division; and regulation of organelle assembly. Located in several cellular components, including cytoplasmic side of plasma membrane; midbody; and nuclear envelope. Part of ESCRT III complex and membrane coat. Implicated in cataract 31 multiple types.

NR:

description
charged multivesicular body protein 4b

GO: NA

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917112.2 False 2036 mRNA 0.39 5 5476756 5489524
XM_034313088.1 True 2039 mRNA 0.40 5 5476750 5489524

Neighbor

gene id symbol gene type direction distance location
nhej1 nhej1 coding upstream 220771 5239845 ~ 5255979 (+)
LOC113530419 ccdc122 coding upstream 322323 5140401 ~ 5154427 (+)
wbp4 wbp4 coding upstream 349154 5122720 ~ 5127596 (+)
LOC113545806 NA coding upstream 759477 4708587 ~ 4717273 (+)
stk11ip stk11ip,LOC107663072 coding upstream 784722 4651006 ~ 4692028 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 33400 5522924 ~ 5538437 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 190542 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 400057 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 669813 6159337 ~ 6180525 (+)
esyt1b LOC108271768 coding downstream 758252 6247776 ~ 6305169 (+)
G22036 NA non-coding upstream 9269 5467266 ~ 5467481 (+)
G22033 ahcy,LOC107729767,LOC107708051,LOC107666127,LOC107596784,LOC107685809 non-coding upstream 13594 5437553 ~ 5463156 (+)
G22032 NA non-coding upstream 39281 5435766 ~ 5437469 (+)
G21982 NA non-coding upstream 141886 5334648 ~ 5334864 (+)
G21973 NA non-coding upstream 146465 5329895 ~ 5330285 (+)
LOC117599465 NA non-coding downstream 5401 5494925 ~ 5500908 (+)
G22054 NA non-coding downstream 58952 5548476 ~ 5610231 (+)
G22097 NA non-coding downstream 211204 5700728 ~ 5700976 (+)
G22110 NA non-coding downstream 219442 5708966 ~ 5709171 (+)
G22123 NA non-coding downstream 292782 5782306 ~ 5786459 (+)
G21901 NA other upstream 267886 5208346 ~ 5208864 (+)
G21835 NA other upstream 388172 5088134 ~ 5088578 (+)
spega speg other upstream 717105 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 1125002 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 1148890 4275073 ~ 4327860 (+)
mych LOC108272607 other downstream 4198 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 12121 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 228006 5717530 ~ 5756688 (+)
tmem74b NA other downstream 478674 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 547190 6036714 ~ 6049905 (+)

Expression


Co-expression Network