LOC113528606 (LOC108271940)


Basic Information

Item Value
gene id LOC113528606
gene name LOC108271940
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13636997 ~ 13640777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917259.2
GCgaattttgaagtgttttaatttttttaatgcattgtgCATTTCAAATGATACCAGTTAAGCAGTGAATACCAAAAACGCTCCAGGTTTTAGGACCCAGCAGAAACAATTCCGCTCCACTCGGGGCCTgtagttgcctagcaacattCAACAGAACCGTACAACAGAAGTATTCGCAGACTTTTCTAGAGGAATAGAGCAGTTATGCCGAAGAAAGGAGGGAagaagggaggaggaggaggaggaaagcagATGACTGAGGAGGAGAGACTGGTGTTCCTGCAGCAGAAGGCTCAGGCTGAAGAAGAAAGTGCCAAAATAAAAGAAGATGTGCTCACACAGTTccttaagGATAAACTGCAGAAGGAAGAGCGGAACAGCACAGTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACGTTTGAGAGAGTTGTGGACTGCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGGGAACGAATTTTGAAGCTGCATCAGCAGGAGACTGAGTACCTGGAAGCAGCCACCTTTGCCTTAGAACAGCGCTATGCTGGAATAGACAGTGAGGCCAGACAGGACTATCAGAATACACGTGATGACATCAAAAACCGGaaCATTGAGGAGAAGCATGCGCTGCGTATCCAGATGGAAGGCAACGTGGAGGAGTTGTGGCAGCAGTTTCAGCATGAACAGCAGAAGTACACTGAAGCCACTGAGGAACGACAGATTGCTTTTGATTCGCTCCGTGCCACAGACCAGCGCAATGCTCAGGAAGCAGACCTGCAGATGAGACACATGCAGAAACTGCAGgaCACCATCAGTGGTCTGCGTTCTCATCTGAGCACCAGTCAGAGGGAGAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAGGTTTCTCAGAAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCGCAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGAAAATATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTAACTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCCAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCGGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacacgcaggacAGTCATAGAGGCGGCTCATGTGGTGCAGCGCACACTGTAGAGAAGACACATGTAAGCAGCAC
>XM_026917266.2
GGCTTGTCTGCATGGAGAATTTGAATTTACTACTCAAATTAGGaatttaatgtttgtttgtttgtttaatACTTTTCTAGAGGAATAGAGCAGTTATGCCGAAGAAAGGAGGGAagaagggaggaggaggaggaggaaagcagATGACTGAGGAGGAGAGACTGGTGTTCCTGCAGCAGAAGGCTCAGGCTGAAGAAGAAAGTGCCAAAATAAAAGAAGATGTGCTCACACAGTTccttaagGATAAACTGCAGAAGGAAGAGCGGAACAGCACAGTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACGTTTGAGAGAGTTGTGGACTGCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGGGAACGAATTTTGAAGCTGCATCAGCAGGAGACTGAGTACCTGGAAGCAGCCACCTTTGCCTTAGAACAGCGCTATGCTGGAATAGACAGTGAGGCCAGACAGGACTATCAGAATACACGTGATGACATCAAAAACCGGaaCATTGAGGAGAAGCATGCGCTGCGTATCCAGATGGAAGGCAACGTGGAGGAGTTGTGGCAGCAGTTTCAGCATGAACAGCAGAAGTACACTGAAGCCACTGAGGAACGACAGATTGCTTTTGATTCGCTCCGTGCCACAGACCAGCGCAATGCTCAGGAAGCAGACCTGCAGATGAGACACATGCAGAAACTGCAGgaCACCATCAGTGGTCTGCGTTCTCATCTGAGCACCAGTCAGAGGGAGAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAGGTTTCTCAGAAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCGCAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGAAAATATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTAACTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCCAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCGGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacacgcaggacAGTCATAGAGGCGGCTCATGTGGTGCAGCGCACACTGTAGAGAAGACACATGTAAGCAGCAC
>XM_034312959.1
GCgaattttgaagtgttttaatttttttaatgcattgtgCATTTCAAATGATACCAGTTAAGCAGTGAATACCAAAAACGCTCCAGGTTTTAGGACCCAGCAGAAACAATTCCGCTCCACTCGGGGCCTgtagttgcctagcaacattCAACAGAACCGTACAACAGAAGTATTCGACTTTTCTAGAGGAATAGAGCAGTTATGCCGAAGAAAGGAGGGAagaagggaggaggaggaggaggaaagcagATGACTGAGGAGGAGAGACTGGTGTTCCTGCAGCAGAAGGCTCAGGCTGAAGAAGAAAGTGCCAAAATAAAAGAAGATGTGCTCACACAGTTccttaagGATAAACTGCAGAAGGAAGAGCGGAACAGCACAGTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACGTTTGAGAGAGTTGTGGACTGCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGGGAACGAATTTTGAAGCTGCATCAGCAGGAGACTGAGTACCTGGAAGCAGCCACCTTTGCCTTAGAACAGCGCTATGCTGGAATAGACAGTGAGGCCAGACAGGACTATCAGAATACACGTGATGACATCAAAAACCGGaaCATTGAGGAGAAGCATGCGCTGCGTATCCAGATGGAAGGCAACGTGGAGGAGTTGTGGCAGCAGTTTCAGCATGAACAGCAGAAGTACACTGAAGCCACTGAGGAACGACAGATTGCTTTTGATTCGCTCCGTGCCACAGACCAGCGCAATGCTCAGGAAGCAGACCTGCAGATGAGACACATGCAGAAACTGCAGgaCACCATCAGTGGTCTGCGTTCTCATCTGAGCACCAGTCAGAGGGAGAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAGGTTTCTCAGAAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCGCAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGAAAATATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTAACTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCCAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCGGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacacgcaggacAGTCATAGAGGCGGCTCATGTGGTGCAGCGCACACTGTAGAGAAGACACATGTAAGCAGCAC
>XM_034312965.1
CATGGAGAATTTGAATTTACTACTCAAATTAGGaatttaatgtttgtttgtttgtttaatCAGACTTTTCTAGAGGAATAGAGCAGTTATGCCGAAGAAAGGAGGGAagaagggaggaggaggaggaggaaagcagATGACTGAGGAGGAGAGACTGGTGTTCCTGCAGCAGAAGGCTCAGGCTGAAGAAGAAAGTGCCAAAATAAAAGAAGATGTGCTCACACAGTTccttaagGATAAACTGCAGAAGGAAGAGCGGAACAGCACAGTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACGTTTGAGAGAGTTGTGGACTGCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGGGAACGAATTTTGAAGCTGCATCAGCAGGAGACTGAGTACCTGGAAGCAGCCACCTTTGCCTTAGAACAGCGCTATGCTGGAATAGACAGTGAGGCCAGACAGGACTATCAGAATACACGTGATGACATCAAAAACCGGaaCATTGAGGAGAAGCATGCGCTGCGTATCCAGATGGAAGGCAACGTGGAGGAGTTGTGGCAGCAGTTTCAGCATGAACAGCAGAAGTACACTGAAGCCACTGAGGAACGACAGATTGCTTTTGATTCGCTCCGTGCCACAGACCAGCGCAATGCTCAGGAAGCAGACCTGCAGATGAGACACATGCAGAAACTGCAGgaCACCATCAGTGGTCTGCGTTCTCATCTGAGCACCAGTCAGAGGGAGAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAGGTTTCTCAGAAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCGCAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGAAAATATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTAACTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCCAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCGGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacacgcaggacAGTCATAGAGGCGGCTCATGTGGTGCAGCGCACACTGTAGAGAAGACACATGTAAGCAGCAC

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 65-like

GO: NA

KEGG:

id description
K23728 CCDC65, DRC2; dynein regulatory complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917259.2 True 1717 mRNA 0.49 9 13636997 13640777
XM_026917266.2 False 1608 mRNA 0.49 9 13637178 13640777
XM_034312959.1 False 1714 mRNA 0.49 9 13636997 13640777
XM_034312965.1 False 1601 mRNA 0.48 9 13637188 13640777

Neighbor

gene id symbol gene type direction distance location
LOC113541997 NA coding upstream 12826 13620324 ~ 13624171 (+)
LOC113537237 LOC108271567,LOC108427546,LOC107708091,LOC107596858,LOC107666053,LOC107729737,LOC107554173,LOC107685839 coding upstream 24116 13596849 ~ 13612881 (+)
LOC113534264 LOC108271528,LOC103030675,LOC108427602,LOC107685800,LOC100537815,LOC107554174,LOC107596796,LOC107666037,LOC107729734 coding upstream 46203 13585092 ~ 13590794 (+)
LOC113534455 kcna3a,LOC108271529,LOC107554199,LOC107708155,LOC107685799,LOC107729772,LOC107666172,LOC107577939,LOC105907781 coding upstream 58518 13570759 ~ 13578479 (+)
slc25a55a LOC108271946,LOC108427598,LOC106566040,LOC107554200,LOC107708156,LOC107685798 coding upstream 121468 13510328 ~ 13515529 (+)
arf3b arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding downstream 10616 13651393 ~ 13658672 (+)
erbb3a LOC108271615,LOC108427608 coding downstream 21068 13661845 ~ 13685537 (+)
pa2g4a pa2g4a,pa2g4,LOC108272117,LOC108427609,LOC107713111,LOC107678215,LOC107581315,LOC107551923 coding downstream 45304 13686081 ~ 13694548 (+)
prkag1 prkag1,LOC107582314,LOC107686771,LOC107752861,LOC107554882,LOC107708574 coding downstream 54305 13695082 ~ 13704328 (+)
plxnb1b plxnb1,LOC108271959 coding downstream 105237 13746014 ~ 13821483 (+)
G26848 NA non-coding upstream 7531 13626481 ~ 13629466 (+)
G26749 NA non-coding upstream 119594 13434904 ~ 13517403 (+)
LOC113533310 NA non-coding upstream 262501 13351846 ~ 13374496 (+)
G26266 NA non-coding upstream 728903 12855396 ~ 12908094 (+)
G26233 NA non-coding upstream 837143 12799618 ~ 12799854 (+)
G26873 NA non-coding downstream 181607 13822384 ~ 13825226 (+)
G26875 NA non-coding downstream 193462 13834239 ~ 13836347 (+)
G26884 NA non-coding downstream 232538 13873315 ~ 13873523 (+)
G26921 NA non-coding downstream 360154 14000931 ~ 14054690 (+)
G27164 NA non-coding downstream 529003 14169780 ~ 14172077 (+)
tshba tshb,LOC108271948 other upstream 130993 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 304820 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 885720 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 1109506 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1423340 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1638045 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2147849 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2442512 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2540394 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2757468 16398245 ~ 16401111 (+)

Expression


Co-expression Network