arf3b (arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878)


Basic Information

Item Value
gene id arf3b
gene name arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13651393 ~ 13658672 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917295.2
GGAGATCTCCTCTGAAACAACGTTGCTCGACTTATCGCGAGAAAACCCGAATTCTCAGCAGGCCTACGGCGAGATTTCCTCCTACCTCTCCGTATGCGAAATCGCCTGGTGTCATCCCTGAGACAGGTAAGATTGCTGGTCTGAAGAAGCTCACTACTGAATCATGGGGAATATTTTTGGTAATCTGCTGAAGAGCCTCATAGGAAAGAAGGAGATGAGGATTCTGATGGTTGGATTGGATGCTGCAGGTAAAACAACCATCCTGTACAAACTCAAGCTGGGAGAGATTGTTACCACCATCCCAACCATTGGCTTTAATGTGGAGACAGTGGAGTATAAGAACATCAGTTTCACTGTGTGGGACGTTGGTGGCCAGGATAAGATCCGACCTCTCTGGAGACACTACTTCCAAAACACGCAGGGTCTAATCTTTGTGGTGGACAGTAACGATCGAGAGCGCGTGAATGAAGCCAGGGAGGAGCTGATGAGGATGTTGGCAGAAGATGAGTTGCGTGATGCTGTTCTCCTCGTTTTCGCCAACAAACAGGACCTGCCTAATGCAATGAATGCAGCTGAAATCACAGATAAGCTGGGCCTCCACTCACTGCGTCACCGCAACTGGTACATCCAGGCCACCTGTGCAACCAGTGGCGATGGCCTGTATGAAGGCCTTGACTGGCTGGCCAATCAGCTGAAGAATAAGAAGTGAGGGATCTCAGGCAGGTGTGGAGGGCTTATTTAGGGCAAGGGGAGGGGTCACTTGGGGCTATCGtattatttggtttggttttgtttgtttacctttGATTTTTTGCAAATGTGTGGTTGTTAGAGCCTTCAGATGGTCTGTGTAAATGGACTCATCACACAAGTTCACACATCAAAATATATAtggacacatggacacacatACACGTGTGCACCTCGACAAATACATGagcacacaaacattaacatctCTGCTCTTTGGTGGTTTCTCTGTATTCAGTGTAAAATGGACCTCAAAACACACTATCAGtcaagtatacagtataatatagcATCCCAGAATAGTCATTATCTCTCCATGCACTGTTTTTCTGCCCTTTggtttctctgtattttaatttttcacacaAAGATAAAGGTTTTCTCTAAAATATAGTGAGCTGAAGCAGTTTCATCTGTTTGATGTTTCAATTAGATTTTTATGGAGTATATTCATTAAGATTGTAATGCAGTTTGTCtcatcacacacgcacacacacacacatacacacacacactctaacattAAGCAGCTCTCTCCTCCTGCTGGTCAGTAACTGTGTTAGTCAGAGTTGAGTATGCTGTGTAAACATGCTCCCCACTGTGTCCTCCTGCATGGCTTCCTCCTTCACTGTGGCTTGGAGAGTCTCGTGGCTCAGTAGACTGTAGATTGCATGTATATGTGTTGTAGAGGTATAGAGTTGCTCGGTGTTGCATGCTGCTTTGTTGTGATGTTGTATTAGAAGGCTGGTATCATGAATGGCTAATCATTTAGATGTAAACGATGGAATACATGGATGATGGAGTAGTAGAAATCGTGAAGGTTATGAAAAATAGTGTCAGATAACGAGTAGTTTGAAATAACGAGGCTGTAAGATTGAAGTGTCGTTTGTTCACATAATGCTTTTGTCTGCATGGCATGCATGctgcatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataggtgcTGAATGTCCCTGTTGCAGGtgaatgtttgtttattaatttacattttatacagttattgaatatgtatttttgtctcTTTGCCGGGTGATTTTGTGCACTAAGAAAATgagcttttgtttttaattctttgAGAAGCTGGATAATGTTAGTAAATAACAGAGGAAACTACCAGTATGCGCACACATACGTGTGTGTGCTTTCAGACAAACTGCATTATGTTACCTTTCTCGATATCTTTCCCTGTGTTGCCTGTAAGTATTCTGTTTGTAATACGCAATGTGAGGATTTGTAACATATCACTCCCACTGAATGTGAATtctgtgttattatttatttgcttatattGTGTCATGCagtctttatttattgtatttatttgaatattgtCTTCAAGTAGCAACAGAATgatcatttgaatatttatgcGTCAGGGTTGTTTTCGTTCAATGTTGGGTAAATTGGTTTTCATACAGCACATATCCATTTCATAGAGTgctgaaaattatgtaaaataaagatattGTGTGTACCAAGGCATCTGGCCGAATGGTAGTGCATGGTATTTTGATAGCAGATCTTACATTAGGCTACAGATGCTGGACTAATGTATATTTTGCTATAAAACTCAGTCTACattactgtaacataaacgCTGCTGTTCTGACATGAAATATTAAGCTATCCTACAAATAACATTCATAGTACTAATGCCACTGTGAGTCATGTGCACGTCTTCAAAGCCTGTAGATTCCCAATAAACAGCTGTCAGACCAAGAAAATCTGTTGATGGTGAGGACTCAATCCGAACTCTACTATTATCCACTACTAAGTGACTACAGTGTAGATCTTTCACAGCTATAGGACTAACATATTCTTTCACTGTATTGTAACAGAAATAACCTCCTCttcaacactcacacactttttaataaagatgcttttacagcatttctatatctatacatatattatacTGCTGGTGctttacagtactgtgtaacTAAAGATGCTCCATATCAGTGGAAGTAAAGTCATAGTACAAGCAAAGCATGGCTGTTCATCCACAGAGACATTACTGTCTTTGATTCTTTGTACCATTTACACAAAGCATCTAAAAGTCTAATTCTACATTAGATCATGTGTCTGTGCTATCCACACATACTGTAATGTGTGATTCACATCCTATGTGTCCAGTTATGTTTTGTGGCCTTATATGctgtattacaaaaaaaaaaaaagaataaatactCATATAAGTTATTGATTTAGTGAGTTACTGAATCGATTTTTGTGGGTGGAAAATAATTGGGAACAAAACTAAGCTGTgagttttaataaagtttaattgaaaaaaaaaatcttaatgttGAAAAGGTTTTTGTGCTTATAGTTGCACCAGACATAAGTTTTGGAAAGTAATTTATAAATCTtacatctgtgtttttcttgtttctgtttttgattACAGAAGTGCGGTTTTGCCTATCCATCAGTTTTGCTTtagttattttaatgatttgtaCCATGTCTCTGAAATTAAGGAGGACTTTGAAAAGTCTCTGAGAAAAATTGCATATAAACTGTGGGTCAAATAGTCCATGCGTGGTACACTGACTGTACTTTGAACCCCAGTAGAACTTGTAAAATGAACTTTTACCATCCGGTTTGTGCCCACAATAAAAGCAAACACTTTTCCATGG
>XM_026917303.2
TTAAGGCAAGAGGAGATCTCCTCTGAAACAACGTTGCTCGACTTATCGCGAGAAAACCCGAATTCTCAGCAGGCCTACGGCGAGATTTCCTCCTACCTCTCCGTATGCGAAATCGCCTGGTGTCATCCCTGAGACAGATTGCTGGTCTGAAGAAGCTCACTACTGAATCATGGGGAATATTTTTGGTAATCTGCTGAAGAGCCTCATAGGAAAGAAGGAGATGAGGATTCTGATGGTTGGATTGGATGCTGCAGGTAAAACAACCATCCTGTACAAACTCAAGCTGGGAGAGATTGTTACCACCATCCCAACCATTGGCTTTAATGTGGAGACAGTGGAGTATAAGAACATCAGTTTCACTGTGTGGGACGTTGGTGGCCAGGATAAGATCCGACCTCTCTGGAGACACTACTTCCAAAACACGCAGGGTCTAATCTTTGTGGTGGACAGTAACGATCGAGAGCGCGTGAATGAAGCCAGGGAGGAGCTGATGAGGATGTTGGCAGAAGATGAGTTGCGTGATGCTGTTCTCCTCGTTTTCGCCAACAAACAGGACCTGCCTAATGCAATGAATGCAGCTGAAATCACAGATAAGCTGGGCCTCCACTCACTGCGTCACCGCAACTGGTACATCCAGGCCACCTGTGCAACCAGTGGCGATGGCCTGTATGAAGGCCTTGACTGGCTGGCCAATCAGCTGAAGAATAAGAAGTGAGGGATCTCAGGCAGGTGTGGAGGGCTTATTTAGGGCAAGGGGAGGGGTCACTTGGGGCTATCGtattatttggtttggttttgtttgtttacctttGATTTTTTGCAAATGTGTGGTTGTTAGAGCCTTCAGATGGTCTGTGTAAATGGACTCATCACACAAGTTCACACATCAAAATATATAtggacacatggacacacatACACGTGTGCACCTCGACAAATACATGagcacacaaacattaacatctCTGCTCTTTGGTGGTTTCTCTGTATTCAGTGTAAAATGGACCTCAAAACACACTATCAGtcaagtatacagtataatatagcATCCCAGAATAGTCATTATCTCTCCATGCACTGTTTTTCTGCCCTTTggtttctctgtattttaatttttcacacaAAGATAAAGGTTTTCTCTAAAATATAGTGAGCTGAAGCAGTTTCATCTGTTTGATGTTTCAATTAGATTTTTATGGAGTATATTCATTAAGATTGTAATGCAGTTTGTCtcatcacacacgcacacacacacacatacacacacacactctaacattAAGCAGCTCTCTCCTCCTGCTGGTCAGTAACTGTGTTAGTCAGAGTTGAGTATGCTGTGTAAACATGCTCCCCACTGTGTCCTCCTGCATGGCTTCCTCCTTCACTGTGGCTTGGAGAGTCTCGTGGCTCAGTAGACTGTAGATTGCATGTATATGTGTTGTAGAGGTATAGAGTTGCTCGGTGTTGCATGCTGCTTTGTTGTGATGTTGTATTAGAAGGCTGGTATCATGAATGGCTAATCATTTAGATGTAAACGATGGAATACATGGATGATGGAGTAGTAGAAATCGTGAAGGTTATGAAAAATAGTGTCAGATAACGAGTAGTTTGAAATAACGAGGCTGTAAGATTGAAGTGTCGTTTGTTCACATAATGCTTTTGTCTGCATGGCATGCATGctgcatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataggtgcTGAATGTCCCTGTTGCAGGtgaatgtttgtttattaatttacattttatacagttattgaatatgtatttttgtctcTTTGCCGGGTGATTTTGTGCACTAAGAAAATgagcttttgtttttaattctttgAGAAGCTGGATAATGTTAGTAAATAACAGAGGAAACTACCAGTATGCGCACACATACGTGTGTGTGCTTTCAGACAAACTGCATTATGTTACCTTTCTCGATATCTTTCCCTGTGTTGCCTGTAAGTATTCTGTTTGTAATACGCAATGTGAGGATTTGTAACATATCACTCCCACTGAATGTGAATtctgtgttattatttatttgcttatattGTGTCATGCagtctttatttattgtatttatttgaatattgtCTTCAAGTAGCAACAGAATgatcatttgaatatttatgcGTCAGGGTTGTTTTCGTTCAATGTTGGGTAAATTGGTTTTCATACAGCACATATCCATTTCATAGAGTgctgaaaattatgtaaaataaagatattGTGTGTACCAAGGCATCTGGCCGAATGGTAGTGCATGGTATTTTGATAGCAGATCTTACATTAGGCTACAGATGCTGGACTAATGTATATTTTGCTATAAAACTCAGTCTACattactgtaacataaacgCTGCTGTTCTGACATGAAATATTAAGCTATCCTACAAATAACATTCATAGTACTAATGCCACTGTGAGTCATGTGCACGTCTTCAAAGCCTGTAGATTCCCAATAAACAGCTGTCAGACCAAGAAAATCTGTTGATGGTGAGGACTCAATCCGAACTCTACTATTATCCACTACTAAGTGACTACAGTGTAGATCTTTCACAGCTATAGGACTAACATATTCTTTCACTGTATTGTAACAGAAATAACCTCCTCttcaacactcacacactttttaataaagatgcttttacagcatttctatatctatacatatattatacTGCTGGTGctttacagtactgtgtaacTAAAGATGCTCCATATCAGTGGAAGTAAAGTCATAGTACAAGCAAAGCATGGCTGTTCATCCACAGAGACATTACTGTCTTTGATTCTTTGTACCATTTACACAAAGCATCTAAAAGTCTAATTCTACATTAGATCATGTGTCTGTGCTATCCACACATACTGTAATGTGTGATTCACATCCTATGTGTCCAGTTATGTTTTGTGGCCTTATATGctgtattacaaaaaaaaaaaaagaataaatactCATATAAGTTATTGATTTAGTGAGTTACTGAATCGATTTTTGTGGGTGGAAAATAATTGGGAACAAAACTAAGCTGTgagttttaataaagtttaattgaaaaaaaaaatcttaatgttGAAAAGGTTTTTGTGCTTATAGTTGCACCAGACATAAGTTTTGGAAAGTAATTTATAAATCTtacatctgtgtttttcttgtttctgtttttgattACAGAAGTGCGGTTTTGCCTATCCATCAGTTTTGCTTtagttattttaatgatttgtaCCATGTCTCTGAAATTAAGGAGGACTTTGAAAAGTCTCTGAGAAAAATTGCATATAAACTGTGGGTCAAATAGTCCATGCGTGGTACACTGACTGTACTTTGAACCCCAGTAGAACTTGTAAAATGAACTTTTACCATCCGGTTTGTGCCCACAATAAAAGCAAACACTTTTCCATGG

Function

symbol description
arf3a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARF3 (ADP ribosylation factor 3).
arf3 Predicted to enable GTP binding activity. Involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in extracellular exosome.

NR:

description
PREDICTED: ADP-ribosylation factor 3-like

GO:

id name namespace
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917295.2 False 3522 mRNA 0.38 5 13651404 13658672
XM_026917303.2 True 3528 mRNA 0.38 5 13651393 13658672

Neighbor

gene id symbol gene type direction distance location
LOC113528606 LOC108271940 coding upstream 10616 13636997 ~ 13640777 (+)
LOC113541997 NA coding upstream 27222 13620324 ~ 13624171 (+)
LOC113537237 LOC108271567,LOC108427546,LOC107708091,LOC107596858,LOC107666053,LOC107729737,LOC107554173,LOC107685839 coding upstream 38512 13596849 ~ 13612881 (+)
LOC113534264 LOC108271528,LOC103030675,LOC108427602,LOC107685800,LOC100537815,LOC107554174,LOC107596796,LOC107666037,LOC107729734 coding upstream 60599 13585092 ~ 13590794 (+)
LOC113534455 kcna3a,LOC108271529,LOC107554199,LOC107708155,LOC107685799,LOC107729772,LOC107666172,LOC107577939,LOC105907781 coding upstream 72914 13570759 ~ 13578479 (+)
erbb3a LOC108271615,LOC108427608 coding downstream 3173 13661845 ~ 13685537 (+)
pa2g4a pa2g4a,pa2g4,LOC108272117,LOC108427609,LOC107713111,LOC107678215,LOC107581315,LOC107551923 coding downstream 27409 13686081 ~ 13694548 (+)
prkag1 prkag1,LOC107582314,LOC107686771,LOC107752861,LOC107554882,LOC107708574 coding downstream 36410 13695082 ~ 13704328 (+)
plxnb1b plxnb1,LOC108271959 coding downstream 87342 13746014 ~ 13821483 (+)
si:dkey-19e4.5 LOC108272187,LOC103025619,LOC108427613,LOC104930301,LOC103373509 coding downstream 168751 13827423 ~ 13834026 (+)
G26848 NA non-coding upstream 21927 13626481 ~ 13629466 (+)
G26749 NA non-coding upstream 133990 13434904 ~ 13517403 (+)
LOC113533310 NA non-coding upstream 276897 13351846 ~ 13374496 (+)
G26266 NA non-coding upstream 743299 12855396 ~ 12908094 (+)
G26233 NA non-coding upstream 851539 12799618 ~ 12799854 (+)
G26873 NA non-coding downstream 163712 13822384 ~ 13825226 (+)
G26875 NA non-coding downstream 175567 13834239 ~ 13836347 (+)
G26884 NA non-coding downstream 214643 13873315 ~ 13873523 (+)
G26921 NA non-coding downstream 342259 14000931 ~ 14054690 (+)
G27164 NA non-coding downstream 511108 14169780 ~ 14172077 (+)
tshba tshb,LOC108271948 other upstream 145389 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 319216 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 900116 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 1123902 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1437736 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1620150 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2129954 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2424617 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2522499 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2739573 16398245 ~ 16401111 (+)

Expression


Co-expression Network