Item | Value |
---|---|
gene id | usp13 |
gene name | usp13,LOC107659032 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047596.1 |
NCBI id | CM018542.1 |
chromosome length | 35203048 |
location | 20335631 ~ 20359651 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
usp13 | Predicted to enable cysteine-type endopeptidase activity; thiol-dependent deubiquitinase; and ubiquitin binding activity. Predicted to be involved in several processes, including protein K63-linked deubiquitination; protein stabilization; and regulation of autophagy. Predicted to act upstream of or within autophagy and ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP13 (ubiquitin specific peptidase 13). |
description |
---|
PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0070536 | protein K63-linked deubiquitination | biological_process |
GO:0008283 | cell population proliferation | biological_process |
GO:0010506 | regulation of autophagy | biological_process |
GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
GO:0050821 | protein stabilization | biological_process |
GO:0004197 | cysteine-type endopeptidase activity | molecular_function |
GO:0004221 | obsolete ubiquitin thiolesterase activity | molecular_function |
GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
GO:0008242 | omega peptidase activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
GO:0043130 | ubiquitin binding | molecular_function |
id | description |
---|---|
K11836 | USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026917366.2 | True | 4569 | mRNA | 0.44 | 21 | 20335633 | 20359651 |
XM_026917375.2 | False | 4567 | mRNA | 0.44 | 21 | 20335632 | 20359651 |
XM_026917384.2 | False | 4550 | mRNA | 0.44 | 21 | 20335634 | 20359651 |
XM_026917393.2 | False | 4549 | mRNA | 0.44 | 21 | 20335632 | 20359651 |
XM_026917400.2 | False | 4547 | mRNA | 0.44 | 21 | 20335631 | 20359651 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
ndufb5 | ndufb5,LOC107709185,LOC107659010,LOC107692354 | coding | upstream | 1940 | 20329443 ~ 20333691 (+) |
actl6a | actl6a | coding | upstream | 11052 | 20315025 ~ 20324579 (+) |
si:ch211-201h21.5 | LOC108271508,LOC108427703 | coding | upstream | 70138 | 20258821 ~ 20265493 (+) |
zgc:172121 | LOC108271828 | coding | upstream | 86173 | 20245574 ~ 20249458 (+) |
atp1b1a | atp1b1 | coding | upstream | 127878 | 20199525 ~ 20207753 (+) |
pde6d | pde6d | coding | downstream | 107498 | 20467149 ~ 20472065 (+) |
phb2b | LOC108427714,LOC107692360,LOC102296991,LOC102211951 | coding | downstream | 113620 | 20473271 ~ 20480074 (+) |
ptmaa | NA | coding | downstream | 153138 | 20512789 ~ 20516555 (+) |
meltf | meltf | coding | downstream | 299168 | 20658819 ~ 20671746 (+) |
lrrc40 | lrrc40,LOC107709203,LOC107590628 | coding | downstream | 314750 | 20674401 ~ 20683491 (+) |
G30436 | NA | non-coding | upstream | 1510 | 20333743 ~ 20334121 (+) |
G30382 | nme7,LOC107732015 | non-coding | upstream | 100859 | 20233975 ~ 20234772 (+) |
G30288 | evi5 | non-coding | upstream | 295657 | 20037735 ~ 20039974 (+) |
G30224 | NA | non-coding | upstream | 417263 | 19918145 ~ 19918368 (+) |
G30049 | NA | non-coding | upstream | 515260 | 19820142 ~ 19820371 (+) |
G30442 | NA | non-coding | downstream | 939 | 20360590 ~ 20361838 (+) |
G30445 | pex5l | non-coding | downstream | 8162 | 20367813 ~ 20368152 (+) |
G30448 | NA | non-coding | downstream | 13055 | 20372706 ~ 20373062 (+) |
G30455 | NA | non-coding | downstream | 21119 | 20380770 ~ 20380982 (+) |
G30467 | NA | non-coding | downstream | 44700 | 20404351 ~ 20404555 (+) |
LOC113543059 | c11h1orf146 | other | upstream | 315405 | 20000046 ~ 20020226 (+) |
smx5 | lsm2,LSM2,smx5 | other | upstream | 798434 | 19534345 ~ 19537197 (+) |
LOC113533886 | espnl | other | upstream | 1248420 | 19061097 ~ 19087211 (+) |
boka | bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 | other | upstream | 1386894 | 18932683 ~ 18948737 (+) |
trnai-aau | NA | other | upstream | 1518156 | 18817402 ~ 18817475 (+) |
dlg1 | dlg1,LOC108271975,LOC108427717,LOC107738730 | other | downstream | 177322 | 20536973 ~ 20658080 (+) |
insl5a | insl5 | other | downstream | 655187 | 21014838 ~ 21017867 (+) |
tmem69 | tmem69 | other | downstream | 2237944 | 22597595 ~ 22603436 (+) |
uhmk1 | uhmk1,LOC107692420 | other | downstream | 3273955 | 23633606 ~ 23653555 (+) |
G32684 | NA | other | downstream | 3660727 | 24020378 ~ 24021036 (+) |