gpx1b (gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170)


Basic Information

Item Value
gene id gpx1b
gene name gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15276905 ~ 15278713 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917581.2
CCTTTGCTCGCCTCACCGCCCTTCGACCCTTCGTGAGTGGTATAGAGTGAGTTTATTTTCTTCGTCGAGTTTTGTTTGCGCTTTGTTGAGTAGAGTTTGCTCCCAAACATGGCTGATATAAAGTCGCTTTACGATATCACAGTGAAGACGCTGACAGGAGAGGAGTTGAAGTTGGCGTCTTTACAGGGTAAGGTGGTCCTCATCGAGAACGTGGCGTCTCTCTGAGGCACAACCATCAGGGATTACACCCAGATGAACGAGCTCCATGAGCGCTTCTCCGCCAAGGGACTCGTGGTTCTGGGGGTGCCCTGCAACCAGTTCGGCcatcagGAAAACTGTAAAAACGAAGAGATCCTGATGTCGCTGAAATACGTCCGTCCCGGAAATGGTTTCGAGCCAAAATTCCAGCTCTTGGAGAAGGTCGACGTGAATGGGAAAGACGCTCACCCGCTGTTTGTCTTTCTCAAAGAGAAGCTTCCGTTCCCCAGCGATGAGCCGACGGCGTTAATGGGCGACCCCAAATGCATCATCTGGAGTCCCGTGTGCAGAAACGACATCTCCTGGAACTTTGAGAAGTTCCTTATCGGCCCAGATGGTGTCCCATTCAAGCGTTACAGCAGAAGATACCTGACCTCTGACATTGAGGGAGACATAAAGAAGCTTCTGGGCATTGCCAAATAAAGCGTTTGTAGTAGTATGGTCTTTCATAGCTGGTTGTGCTCTCTTGTGCACGATGCTGCTGTGTTGGGACTCTTACTTGATGAAGATGCTCTTTTAAACATTGTGAAGGGCTATCTGATGTTCTGTAAACATCCCAACTCCACAGTTGCATAGAGCTTCATGTATGGCACAACAAGCCCTTTTGTGgatcaataaatattatttttaatcctt

Function

symbol description
gpx1b Predicted to enable glutathione peroxidase activity. Predicted to be involved in several processes, including glutathione metabolic process; hydrogen peroxide catabolic process; and response to selenium ion. Predicted to act upstream of or within response to oxidative stress. Predicted to be active in cytosol and mitochondrion. Is expressed in digestive system; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in several diseases, including anemia (multiple); cardiovascular system disease (multiple); hematologic cancer (multiple); nutritional deficiency disease (multiple); and pseudoxanthoma elasticum. Orthologous to human GPX1 (glutathione peroxidase 1).
gpx1 Enables SH3 domain binding activity; glutathione peroxidase activity; and phospholipid-hydroperoxide glutathione peroxidase activity. Involved in several processes, including UV protection; icosanoid metabolic process; and negative regulation of apoptotic process. Located in mitochondrion. Colocalizes with Lewy body. Implicated in several diseases, including anemia (multiple); cardiovascular system disease (multiple); hematologic cancer (multiple); nutritional deficiency disease (multiple); and pseudoxanthoma elasticum. Biomarker of Huntington's disease; artery disease (multiple); diabetic angiopathy; inflammatory bowel disease (multiple); and nephrosis.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: glutathione peroxidase 1

GO: NA

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917581.2 True 894 mRNA 0.48 2 15276905 15278713

Neighbor

gene id symbol gene type direction distance location
nprl2 nprl2 coding downstream 237302 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 244343 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 252372 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 267722 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 407202 14862967 ~ 14869703 (-)
rad18 rad18 coding upstream 226931 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 339638 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 473500 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 483823 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 499477 15778190 ~ 15784244 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 30552 15244315 ~ 15246353 (-)
G27706 NA non-coding downstream 125856 15150812 ~ 15151049 (-)
G27705 NA non-coding downstream 130750 15144705 ~ 15146155 (-)
G27699 NA non-coding downstream 146645 15130003 ~ 15130260 (-)
G27652 NA non-coding downstream 211694 15064885 ~ 15065211 (-)
G27904 LOC108271919 non-coding upstream 104201 15382914 ~ 15384090 (-)
G27932 NA non-coding upstream 193628 15472341 ~ 15472547 (-)
G27935 NA non-coding upstream 199077 15477790 ~ 15478008 (-)
G27953 NA non-coding upstream 225119 15503832 ~ 15504043 (-)
G28173 NA non-coding upstream 336312 15615025 ~ 15616748 (-)
pxmp4 pxmp4,LOC103464829 other downstream 400915 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1218460 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1369716 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1629728 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1642161 13632262 ~ 13634744 (-)
G27843 NA other upstream 18596 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 177922 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 183237 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 847117 16125830 ~ 16135715 (-)
G29158 NA other upstream 1994242 17272955 ~ 17280173 (-)

Expression


Co-expression Network