znf648


Basic Information

Item Value
gene id znf648
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17433348 ~ 17437899 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917748.2
GTGTAAGCAATTCTGAAGTGCTCGACTCCTCCTCTGGCATCTTAATCCTCCCTGCTGGTTAAAAATGCACGAGTCACAGTGAAATCAACCTCAGCAGACGTGTAGCCTGAAGTCTGGTCAGACATTTATGTGAGAATTGTCTGGGAGCTGCAAGACCAGTGctaaccaaaaataaaaatggcagaaaattcTAACAGCTTGAAGCCAGACATCTTCAACGATAAAACCTACATGTCAAAAAGAAGCATCAGAAAGACCTTAATGAATAAGATACGGTATACACCCGTAGAGAATGAACTCACCACTAATGCTAAAGAGTCACTGTTTTCTGCTGGCTGTGCCAGTGAGATGAATCCAGTGTGCTGTGATGCACAGCAGGAAATGAATGAGTGTAAAAATGTTAGTGAGATCCAGAAGGTTGGATTTGAGCCTGAGGAAGTGTCCGGCTTTGCCAGCCTGAGGGTGAAACTTGAGGAAGACTGGACCGAGTTTGAATTGGCACCAGCTCCAGTAAGGAAACAGGAAGCCGCAGTAGATAACAATGTAGCAATGGCATCCAGGGAACACGAGCCAAATTCTGAACCAAAACAAACAGGCAAGACACTTTATGTTTTCGAAGCTATGAAAAAGCGGAGCATGGAGGGAGATGCAGAAAACCGCCCTTACAAATGCCCTTACTGCAGCTGGGCCTTCAAGAAGTCCAGCAACCTACTGAGCCACGTGGAGACGCACAGCGGGCTGAAGCCACACGTGTGCGAACTGTGTGGAAAAGCCTACGCACATCAGGGCACCCTGCAGCAGCACAAGCGGCTACACACGGGCGAGCGGCCCTACAGCTGCCCATTCTGCGACAAGACCTACACATGGTCCTCTGACCACCGCAAACATATCCGCACGCACACTGGCGAGAAGCCATACGCATGCACAGAGTGCGGCAAGGAATTCGTGCGCTCATCGGACCTGCGCAAGCACGAGCGCAACATGCACACCAATGACAAGCCGTTCCTGTGTCGTGCGTGTGGCAAGACTTTTAATAAGCCTCTAGCACTGCTACGACATGAGCGTACACACCTGGGTGAGCGGCCTTTCATCTGTCCAGACTGTGGCAAAACCTTTGCCCTTCCCTCCCGCCTGGCTGAGCACCAGAAAGTCCACAGTGGCTTGCGGCCGTATGTCTGCCCCATCTGCACAAAAGCCTTCACTAAGTCCTCAAACCTGACTGAGCATCTGAGCGTGCACACGGGTTTCCGTCCACACGTGTGTGCCGAGTGCGGTGTGGCTTTCACCATGCCCTCACGCCTGCTACGGCACCAGCGCACACATGCGGCCCGACGACTGCAGCAGGTCCTTCAGCCACCAGTTTAGCCCTTTGTGTTCTGTTCATTACTGACCAATATTCTGTCCCATTATAGCAATACAATTGcaacaataattttaaaatacctAGCATATTGTCTCtttattgattataaatataaacaatactgACAGAAATGGAGCCTCTTCCCATACTGAGATACTGCTAATGGTCAGCGGGACTGGAAAAGAGATGGAAGGAATAAGCCAGCTACTTCAGctttttggtttaaaattacaaacaaaagtaattttaataacCTTCATTTATTTTGGCTTGTAAACTCTTAGCTGAACATTAGGgttttttacatgtttactaGACAGGGCCCCTGAGTAGCACAACAGCACAAAGGAAAAGTGGATGCATGCTCATATCCCAATGacgccacagccatccatggccactCGCCAAGGGAGAAAAATtatctgtgctctctctctctcccctcttagtcacagtgacactagccaatacTAATAGCATGTGGTAAGATGAGGCCAGCTGGCTTCTTGCGTCTCTGAAGAAGGACATTAGCCTTCTGGTTGGTGGCAGTCGTATAacaggggagagctggctggcgggtgggtgggaattggccggTAATGAAATTGTGAAGAAAAATGGGGGAGGGGGGTGgattaaaacataaaagtttATGTTGGAAACTTGTTTTTAatgctgttgcattttttaCTGACTTTTCTGTGCATCATTATTATAACCTCAACAGAACAGGGGTAATTTATATGGAACAATGTTAACCTAAAATCTCTTTactaatttttaatatttcttgttttgttgaTTTGCTTAGCaaacttttttgtatttttttctttataatatttagtTTTATGTATTCtcttttacatattatattagaCATACAGTTTCTTTGACTTTGCAGTCAcctctcaacacacacatgtagtcTGACAGCTGCACCccagtttaatatttaaaccttttttaagACCTTCATTCGTTTTGACATACAGAcaattatttacttaatttattctctttttttgtaccatgttttttttccctctgtctaATGGTTTTATAATGTAGATGCTTTCAATTTTTGTCACATCCTCCATGATGGCATTAAATCCTTCCCCTGTCATA
>XM_026917757.2
GTGAAATCAACCTCAGCAGACGTGTAGCCTGAAGGTAAGAAACTCAGACATATGCAGATGTCCTGTTCTTGTCACAGTCTGGTCAGACATTTATGTGAGAATTGTCTGGGAGCTGCAAGACCAGTGctaaccaaaaataaaaatggcagaaaattcTAACAGCTTGAAGCCAGACATCTTCAACGATAAAACCTACATGTCAAAAAGAAGCATCAGAAAGACCTTAATGAATAAGATACGGTATACACCCGTAGAGAATGAACTCACCACTAATGCTAAAGAGTCACTGTTTTCTGCTGGCTGTGCCAGTGAGATGAATCCAGTGTGCTGTGATGCACAGCAGGAAATGAATGAGTGTAAAAATGTTAGTGAGATCCAGAAGGTTGGATTTGAGCCTGAGGAAGTGTCCGGCTTTGCCAGCCTGAGGGTGAAACTTGAGGAAGACTGGACCGAGTTTGAATTGGCACCAGCTCCAGTAAGGAAACAGGAAGCCGCAGTAGATAACAATGTAGCAATGGCATCCAGGGAACACGAGCCAAATTCTGAACCAAAACAAACAGGCAAGACACTTTATGTTTTCGAAGCTATGAAAAAGCGGAGCATGGAGGGAGATGCAGAAAACCGCCCTTACAAATGCCCTTACTGCAGCTGGGCCTTCAAGAAGTCCAGCAACCTACTGAGCCACGTGGAGACGCACAGCGGGCTGAAGCCACACGTGTGCGAACTGTGTGGAAAAGCCTACGCACATCAGGGCACCCTGCAGCAGCACAAGCGGCTACACACGGGCGAGCGGCCCTACAGCTGCCCATTCTGCGACAAGACCTACACATGGTCCTCTGACCACCGCAAACATATCCGCACGCACACTGGCGAGAAGCCATACGCATGCACAGAGTGCGGCAAGGAATTCGTGCGCTCATCGGACCTGCGCAAGCACGAGCGCAACATGCACACCAATGACAAGCCGTTCCTGTGTCGTGCGTGTGGCAAGACTTTTAATAAGCCTCTAGCACTGCTACGACATGAGCGTACACACCTGGGTGAGCGGCCTTTCATCTGTCCAGACTGTGGCAAAACCTTTGCCCTTCCCTCCCGCCTGGCTGAGCACCAGAAAGTCCACAGTGGCTTGCGGCCGTATGTCTGCCCCATCTGCACAAAAGCCTTCACTAAGTCCTCAAACCTGACTGAGCATCTGAGCGTGCACACGGGTTTCCGTCCACACGTGTGTGCCGAGTGCGGTGTGGCTTTCACCATGCCCTCACGCCTGCTACGGCACCAGCGCACACATGCGGCCCGACGACTGCAGCAGGTCCTTCAGCCACCAGTTTAGCCCTTTGTGTTCTGTTCATTACTGACCAATATTCTGTCCCATTATAGCAATACAATTGcaacaataattttaaaatacctAGCATATTGTCTCtttattgattataaatataaacaatactgACAGAAATGGAGCCTCTTCCCATACTGAGATACTGCTAATGGTCAGCGGGACTGGAAAAGAGATGGAAGGAATAAGCCAGCTACTTCAGctttttggtttaaaattacaaacaaaagtaattttaataacCTTCATTTATTTTGGCTTGTAAACTCTTAGCTGAACATTAGGgttttttacatgtttactaGACAGGGCCCCTGAGTAGCACAACAGCACAAAGGAAAAGTGGATGCATGCTCATATCCCAATGacgccacagccatccatggccactCGCCAAGGGAGAAAAATtatctgtgctctctctctctcccctcttagtcacagtgacactagccaatacTAATAGCATGTGGTAAGATGAGGCCAGCTGGCTTCTTGCGTCTCTGAAGAAGGACATTAGCCTTCTGGTTGGTGGCAGTCGTATAacaggggagagctggctggcgggtgggtgggaattggccggTAATGAAATTGTGAAGAAAAATGGGGGAGGGGGGTGgattaaaacataaaagtttATGTTGGAAACTTGTTTTTAatgctgttgcattttttaCTGACTTTTCTGTGCATCATTATTATAACCTCAACAGAACAGGGGTAATTTATATGGAACAATGTTAACCTAAAATCTCTTTactaatttttaatatttcttgttttgttgaTTTGCTTAGCaaacttttttgtatttttttctttataatatttagtTTTATGTATTCtcttttacatattatattagaCATACAGTTTCTTTGACTTTGCAGTCAcctctcaacacacacatgtagtcTGACAGCTGCACCccagtttaatatttaaaccttttttaagACCTTCATTCGTTTTGACATACAGAcaattatttacttaatttattctctttttttgtaccatgttttttttccctctgtctaATGGTTTTATAATGTAGATGCTTTCAATTTTTGTCACATCCTCCATGATGGCATTAAATCCTTCCCCTGTCATA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917748.2 True 2491 mRNA 0.45 2 17433348 17437899
XM_026917757.2 False 2456 mRNA 0.45 2 17433426 17437899

Neighbor

gene id symbol gene type direction distance location
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding upstream 37209 17392329 ~ 17396139 (+)
LOC117595909 NA coding upstream 248665 17179243 ~ 17184683 (+)
hyi hyi coding upstream 367249 17054132 ~ 17066099 (+)
lrrc41 lrrc41 coding upstream 958202 16464943 ~ 16475146 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding upstream 969812 16460401 ~ 16463536 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding downstream 27682 17465581 ~ 17468158 (+)
tgfbr3 tgfbr3 coding downstream 228685 17666584 ~ 17767280 (+)
znf644b LOC108271612 coding downstream 366646 17804545 ~ 17840982 (+)
barhl2 barhl2,LOC107749991 coding downstream 480501 17918400 ~ 17922819 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding downstream 701156 18139055 ~ 18146917 (+)
G28997 NA non-coding upstream 7025 17423821 ~ 17426323 (+)
G28889 NA non-coding upstream 295498 17100226 ~ 17137850 (+)
G28865 NA non-coding upstream 379602 17052930 ~ 17053746 (+)
LOC113524191 NA non-coding upstream 589963 16842244 ~ 16843385 (+)
G28676 ptprf non-coding upstream 702143 16729214 ~ 16731205 (+)
G29036 NA non-coding downstream 92676 17530575 ~ 17535351 (+)
G29105 NA non-coding downstream 245922 17683821 ~ 17688735 (+)
G29106 NA non-coding downstream 256855 17694754 ~ 17764773 (+)
G29281 znf326 non-coding downstream 645820 18083719 ~ 18085644 (+)
LOC113536874 NA non-coding downstream 920303 18358202 ~ 18360035 (+)
tomm6 tomm6 other upstream 1032237 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1251039 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1330100 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 1642904 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2128854 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 1336871 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 1379503 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 1494784 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 1623198 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 2096446 19534345 ~ 19537197 (+)

Expression


Co-expression Network