glulb (LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462)


Basic Information

Item Value
gene id glulb
gene name LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17392329 ~ 17396139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917771.2
GTTTCATCTCGCGCTTTAAAAGTTCGTGCGAGGGCTCACACTGCCGGTAtggagaatgagagaaaaaagagtttGTATTTCTTTGTAAAAACAGCTGGACATACACCCAGTCATCTCCTGATTATTTATTCCTGTTGAAAGGAGTCTTATAGCCCAAAGAGAAAATGGCCACTTCCTCCAGCGCAAAGCTGAATAAAGCTGTGAAGCAGCTGTACATGGACCTGCCACAGGGAGACAAAGTGCAGGTCATGTACATCTGGATTGATGGGACTGGAGAGGGACTCCGCTGCAAGAGCAGGACTCTGGACTCAGAACCCAAGAGCATTGAAGATCTCCCAGAGTGGAATTTTGATGGCTCTAGTACGTACCAGGCTGAGGGCTCGAACAGTGACATGTACCTCATACCAAAGGCCATGTTTAGAGACCCCTTCAGGAAGGACCCCAACAAGCTGGTTCTTTGTGAGGTTCTCAAATACAACAGGAAACCTGCAGAAACCAACCTTCGTCAGATGTGTGATAAGATCATGAGCAAGGTAGTGGACCAACATCCATGGTTTGGAATGGAGCAGGAGTACACACTCCTTGCCATAGATGGTCATCCTTTTGGCTGGCCCTCAAATGGTTTCCCAGGACCACAAGGTCCTTATTACTGTGGCGTGGGAGCGGATAAGGCCTATGGCAGAGATATTGTTGAGGCCCATTATAGAGCCTGTCTGTACGCTGGGGTTATGATTTGCGGCACCAATGCAGAAGTCATGCCTGCACAGTGGGAATTTCAAGTGGGTCCTTGTGAAGGTATCACCATGGGAGACCACCTGTGGATAGCTCGTTATATCCTGCACAGGGTGTGTGAAGACTTTGGTGTTGTGGTCTCTTTTGACCCCAAACCCATCCCAGGCAACTGGAATGGTGCTGGCTGCCATACCAACTTCAGCACTAAGAACATGCGAGAGGACGGAGGCCTCAGGTATATTGAGGAGGCTATTGAGCGGCTGAGCAAGAGGCATCGCTACCACATTCGTGCCTACGACCCTAAAGGGGGGCTTGACAACGCCAGACGTCTTACTGGCCGCCATGAGACCTCCAACATCAACGACTTCTCAGCTGGCGTGGCTAACCGTGGTGCCAGTATCCGAATCCCACGAGCTGTGGGCCAGGAGAAGCGAGGCTATTTCGAGGATCGCCGTCCCTCAGCTAACTGCGACCCATATGCTGTGACGGAAGCGATCATTCGCACATGCCTACTTAATGAGGAAGGGGAAGAGCCCATAGAGTACAAATGAACTGAAAAGAAATCCCATGTGCCTTCTTTAAAATAAGTGATTTGGGGAATAGAAATGTCATGCCTTTTTAGTACTGTGGTTTTACTGGAATCTTGTGCATAGTTGACTGGTCAATCTGATACAAGAGTCTAAGTGGAGCTTATCCAGGAAAGTCATTAGCTGTCCTCATTTTTGTTAATATAAATCTCGTTGGTGCAATCTCAGCGCATCACCGACAAATTGTTATAACAGGCTTTATTCCGGATGCTGGTTGTCTAGTGAGTATGGAAGAATGATGGGTAGAAGATTTCTGTTCCACTCACATAATGTGAAACAAGTTTTTCTGTGATCCTCTATTTTGAGCATTAACATGGATTTTAACGATTACATTCCTTTTATGaccatgttttattcttattcagTTATGGGTACAGATGACTGGTTTTATGTTATGGTTCAACTTTCATATGTACATCTGTTAATGGTGTTGGTATTATTCttactgaataattttataacagaatttacttttttgtattacaggtacattaaaaacatgtggTATTTTCTGGTA

Function

NR:

description
glutamine synthetase-like

GO:

id name namespace
GO:0006542 glutamine biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004356 glutamate-ammonia ligase activity molecular_function

KEGG:

id description
K01915 glnA, GLUL; glutamine synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917771.2 True 1836 mRNA 0.46 7 17392329 17396139

Neighbor

gene id symbol gene type direction distance location
LOC117595909 NA coding upstream 207646 17179243 ~ 17184683 (+)
hyi hyi coding upstream 326230 17054132 ~ 17066099 (+)
lrrc41 lrrc41 coding upstream 917183 16464943 ~ 16475146 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding upstream 928793 16460401 ~ 16463536 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354 coding upstream 998322 16391412 ~ 16394007 (+)
znf648 NA coding downstream 37209 17433348 ~ 17437899 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding downstream 69442 17465581 ~ 17468158 (+)
tgfbr3 tgfbr3 coding downstream 270445 17666584 ~ 17767280 (+)
znf644b LOC108271612 coding downstream 408406 17804545 ~ 17840982 (+)
barhl2 barhl2,LOC107749991 coding downstream 522261 17918400 ~ 17922819 (+)
G28889 NA non-coding upstream 254479 17100226 ~ 17137850 (+)
G28865 NA non-coding upstream 338583 17052930 ~ 17053746 (+)
LOC113524191 NA non-coding upstream 548944 16842244 ~ 16843385 (+)
G28676 ptprf non-coding upstream 661124 16729214 ~ 16731205 (+)
G28574 NA non-coding upstream 856984 16533875 ~ 16535345 (+)
G28997 NA non-coding downstream 27682 17423821 ~ 17426323 (+)
G29036 NA non-coding downstream 134436 17530575 ~ 17535351 (+)
G29105 NA non-coding downstream 287682 17683821 ~ 17688735 (+)
G29106 NA non-coding downstream 298615 17694754 ~ 17764773 (+)
G29281 znf326 non-coding downstream 687580 18083719 ~ 18085644 (+)
tomm6 tomm6 other upstream 991218 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1210020 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1289081 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 1601885 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2087835 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 1378631 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 1421263 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 1536544 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 1664958 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 2138206 19534345 ~ 19537197 (+)

Expression


Co-expression Network