gadd45ab (gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351)


Basic Information

Item Value
gene id gadd45ab
gene name gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17465581 ~ 17468158 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917816.2
CGCTCGTGCGGCTTCATACCCGGCATATTCTGGTGAGGAGCTCGTGCGTGCTTGTGTGAGCACTTTAGGATTACTGGCAGCGAGACCTGCAGTCTGCCTCGGATTATTTACCTGATGTGCAATATGACCTACGAAGAATTTTGCGGAGATAACGCCACAGAAAGAATGGACTCTGTGGTGAAGGCGCTGGAGGAGGTGCTGACTGCTGCTTTACCTCAGGGCTGTATCACAGTCGGGGTTTACGAGGCTGCGAAATCACTCAACATAGATCCAGACAACGTGGTCTTGTGTCTTCTGGCTACAGATGAGGAGGATGTCCAGGACGTTGCCCTTCAGATCCACTTCACACTGATCCAAGCCTTCTGCTGCGAAAACGACATCAACATTTTGCGTGTGAACAACATGAGATGGCTGGCGGAGATCCTGGATGGTGTCAAGCCAATGGGAGGAGAGCCAGTGGACCTGCACTGCGTCTTAGTCACTAAACCACAGTCGTCTGCATGCAAAGACCCAGCCTTGAACAAGCTGAATCGTTTCTGCAGAGACAGTCGCTGTTTGGATCAGTGGGTGCCCGTCATCAACCTGCCTGAACGATGAGACCGAGCAGACCGATCACATCACGAATCACACAAGCTACTGCACCGTATTTGTGTATACCTGCCTCGGCCGAATCCCTGGACTGTCTTTACATTGCCACAAGGAGGATGACAGGAGGGGGAAAATCGACAAAATGCAAGGAACAAGGAAATCTAATCCACCAGCCACGCTGATCGGGAGCATGGGGATTTTCTTTCACGCTGGAGAGCGAGGCATGAACAGGAAGCATGACTCAGCAGGGTGTTAGCAATGTTGACACGGAATGAACCACAGCTCCTGCCTTTCTGGAATAATAAGACTGTACCGGAAATCAAAGGACCAGAATAAATCGGAGTGACTGCACTGAGCACGACTCGGATTGATGGATTACTAAACACATTTCCAAAACAGAATGTTCTGGAACCTGGAGGGGACTTATAACTTATGATGTTTAATTATTCTAACTATTTAAATGGGGGATAAatagtgtttttggttttgcaaaACATAAGTTTTGTAAAGCTTTACCTTTTTTGTGACCgttctctttgtctgtctgtttaatgtgttaatttaatGATTTGTATTTATGTTGCAATGTACAGTTTTGTAAAACtgttcaatttaaataaaatgaaaccgCAACATGA

Function

symbol description
gadd45ab Predicted to be involved in regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axis; choroidal fissure; eye; pancreas primordium; and pronephric mesoderm. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).
gadd45a Enables kinase binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including cellular response to mechanical stimulus; negative regulation of protein phosphorylation; and positive regulation of stress-activated MAPK cascade. Located in cytoplasm and nuclear speck.

NR:

description
growth arrest and DNA damage-inducible protein GADD45 alpha-like

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917816.2 True 1226 mRNA 0.46 4 17465581 17468158

Neighbor

gene id symbol gene type direction distance location
znf648 NA coding upstream 27682 17433348 ~ 17437899 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding upstream 69442 17392329 ~ 17396139 (+)
LOC117595909 NA coding upstream 280898 17179243 ~ 17184683 (+)
hyi hyi coding upstream 399482 17054132 ~ 17066099 (+)
lrrc41 lrrc41 coding upstream 990435 16464943 ~ 16475146 (+)
tgfbr3 tgfbr3 coding downstream 198426 17666584 ~ 17767280 (+)
znf644b LOC108271612 coding downstream 336387 17804545 ~ 17840982 (+)
barhl2 barhl2,LOC107749991 coding downstream 450242 17918400 ~ 17922819 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding downstream 670897 18139055 ~ 18146917 (+)
LOC113536767 LOC108272161 coding downstream 830217 18298375 ~ 18413955 (+)
G28997 NA non-coding upstream 39258 17423821 ~ 17426323 (+)
G28889 NA non-coding upstream 327731 17100226 ~ 17137850 (+)
G28865 NA non-coding upstream 411835 17052930 ~ 17053746 (+)
LOC113524191 NA non-coding upstream 622196 16842244 ~ 16843385 (+)
G28676 ptprf non-coding upstream 734376 16729214 ~ 16731205 (+)
G29036 NA non-coding downstream 62417 17530575 ~ 17535351 (+)
G29105 NA non-coding downstream 215663 17683821 ~ 17688735 (+)
G29106 NA non-coding downstream 226596 17694754 ~ 17764773 (+)
G29281 znf326 non-coding downstream 615561 18083719 ~ 18085644 (+)
LOC113536874 NA non-coding downstream 890044 18358202 ~ 18360035 (+)
tomm6 tomm6 other upstream 1064470 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1283272 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1362333 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 1675137 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2161087 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 1306612 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 1349244 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 1464525 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 1592939 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 2066187 19534345 ~ 19537197 (+)

Expression


Co-expression Network