wdr78 (wdr78)


Basic Information

Item Value
gene id wdr78
gene name wdr78
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20999483 ~ 21011730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918107.2
GGTTACAGTAAAGCAGCGCGTGCAGTGAGCTGctgtatgtgcttgtgttttCTAGCTGAGTAAGGATTAACCATGTCCAACACCACGGCAAAGCAAGTGAGACCGACTTTAAAAGTGAAACCATCATCTCGAGTGATGAATCAGTCAGGATCTGGAACACTCCGTATAAACCAAAGTTCCACAAACAGGAGGAGTGTCAATGCGTCTGTGAGCCGAAGGAGCTTCTCTTTAGCAAGAGACAGTAAAGTTCTTGATAAAGTCTCCATTCAACCCCCCAAACACACTGTACAGGTGTTTGATGAAACAGGGAAGGATGTCACTCCTCGGCCTCTGTACCAGCTGCAACCCGGAGCCACGCAAACCAAACAGAGCAAAATATTCACAGGACATGACACATCAGAAGGGACTGTCTCTGACTTCCTGTCCACAGTGTACCACACCATGAGCGCAAGCTCTGCAGGACCCTTTACCATGTCTGTTTTGGGGAGTAGTTTCGTGTCGAGGGCGAGTCACTCTATCATGGAATCAGTGAGTGATGAAATGGAGGAGCCTTCTGCAAAACAGGAAACCTTGATTAGTCTCTCAGAACTAAAGATCAAGAGAGAGGAGCAGATCATGGAGCCCCAGCTGGACAATCCAGTGGATATTTACCTCAATGAGACAGAGATCATGTGCTTCCTCGACATTCCTGCAGTGTCCATTTGTGTTGACTCAGAAGAGGCTGAAGCAGTCAAGAAAAGGAACAAGGAATATACAGAAATTTGCAAGAGCAGACAGGGAAATGATAAATATATGGAGCGAGCAATGCAGACGATTAACTCATCATCTAAGTCTAAAGAAGTCCAAAGCGATCACATCACCATGGTGGAAAAAGGTTCTATGGCCACCAGATGGGACATCTATGACTTGTCTGTGAGCAGCAGCAGGGCAGAAGAGCCAGGCAGTAATACAGATGAAGAGAAACCCACCCTCCCAGATGTCTCCTCCACTCATTGTCTAGAGTCAAACACAGGTCTCCAGAGAACCATGTCCAGGGTCAGTGCCACCAGCACAGCCAGTACCTCTAGCTCCCAAAGAGAGGTGGAGGCTTCCACAGCACAGATGGTGGATGAGCCTGACTCAGAGCAGATCCTGCACTCAGAGAAGTTCCAGCAGTCCCTGCAGGTGATGGAGAGAACAGTTCTGCTGAACATCTACCAAAACAAACTAGCTGCCTACAGAGGGCTGCCCATACTGCGGGATCCAGACCATACGCTGAACCTGGGTATTGAGGACAGCGTACAGATTAAGGAGGAGGATTCGCTGAGTCCAGCTCTGGAGCTCCTCTGGGCCTTCAGCTGTGAGCTAACTAAGGGCCACAGTGTCAGCAGCATGGCCTGGAACAAGAAAAATCCAGATGTTCTGGCAGTGGGATACGGGCAGTTTGACTTCATGGATCAGAAATCTGGACTTGTCTGCATCTGGTCTCTGAAGAATCCTACTTGGCCTGAGCGGATTTTCAGCTGTAAAACCAGTGTAACATCCTTGGACTTCTCAGCCTCTAACCCCAGTCAGTTAGCAGTGGGCCTATATGACGGCACCATCGCTATCTACAATGTGCAGAGCACTAATGCAACACTGGTCTGTGACAGCAGGGACTGTGCCCAAAAACACACGGCTCCAGTGTGGCAGGTGAAGTGGATCGATCGCATACGGAGTCCATCAGGAGAAGATAAAAGAGAGACTCTGTTCTCTGTGTCTGCTGATGCGAGGATCAGTGAATGGTTCCTTCATCAAGGCCTTGACTGTACTgATATGATGAAGCTGAAGAGGATAAGGaatgagaaaacagagaaactgTGGAAGCATGAGCCATTGATCTCTCGCTGGGCAGTTGGACTGTGCTTCGATTTTCACCGCCATGATTCCAACATGTATTTGGTGGGAACGGAAGAGGGACATATTCATGAATGCTCCTGTTCATACAACGAGCAGTTCTTGGAGACCTACACAAATCACTTAGGTCCCGTCTATAAGGTCACATGGTCACCGTTTTGTCCAGATGTTTTCCTCAGCTGTTCTGCAGACTGGACCATTCAGCTTTGGAGTCGGGATCACTTTACTCCAGTGCTGAGCTTCACTTCCATCAAGAAAGCCGTGTATGATATCATGTGGTCCCCTCGCTGGGCTACTGTGTTCGGGGCGGTCAACAAGGACAGAGTGGAAATCTGGGATCTGGGAGCTAGCATTCTGAATCCGACTTTAATAAGTGAGGCCAATCCAGGGGTAAAACCAACCTCTCTGCTATTTGCCTTGAAGACAGACTGTGTTCTAGTAGGGGACAGTGAGGGCCATGTCAGCGTCTACAAGCTGAAGAACTTCACAGCAGGAGAAGGAACAGAGGTGGACACACTGAAGGACATAGTCAGCTCCACACTGGCCAGTCAGCTCTGAGAGCGCTGAGACACCACATGGGACTGTTTACTGTGGTGCTGGATGTGAATCAGCCTGTTGAACTGACCTGctctaataacaataataatctaataattaatttttcatacatagcacattaaaaaaaaatacactttgaAGAGTTTTCCAGATAAaactaaagtaaaataaaataagaagaaaggcaacatacaaatataaaataaaaaatggaaatagaGTCAACCTTGGCAGGGGGATTCCTACTGAGGTAGACAATGTTTTGCTTAAAAAATAGggataaaataattaaagaacacAAGAGCACATgatattataagaaaataatcaacaatggggtgatgtgatatagtctgacacacaaaaaaagattatCATTACCACAACAAAGTTgcttattgtcctataacagcaagtgctgaagtgttttattcctctcataccacagcgaCTTGTAATGCTGATTacgaatatttttaaaaataatgacatcaagttttatccatttataggtacatttaatgtcatggaatgtctacaaacaagttagtttcttttatcacttacattataggagctataaacagccttctatcactagcctctcttttttttataagtaaAAAGGACTTGCTGtgtttttacagagaaactgcaaagccctctaTCCTGTAGTGGAAAACTTTGGAACATCTGcttcaaacaaaaataagtcGAGAGGCCATCACACTTGACCTATGCAATAGGCTATtgtctagtgaatttttagaataAACCCAATAATTTACGGCAGTTGAGAGTCGATATcgtacagtcatccagcatacagcagcttgttttgtgcagttttagaTGTACCTTTGTCCAACAGCAGGTGAGTTTCCTGCAGAAAATTCAGGCATTGTaaaagggagacacatttttcttttttctctcaccatGGGAAACATGATGTATGTACATTATGCACTTCATAACCCCCCTTTGTCGCTCcctattttgtaatatatataaatggttCTGTATGTCATAGACACACCACATGCAATTAAACTTTGCATTAGATTGAattccaaatattttatttaaaacaagatcttggcagccgtatttttaaactagtccAATCAGGCAGTCTGTCTGCTTCTCCTCCCCcgagcatggggcagtgtgattcctgccacagtgggcctctattagtgcCTTTTACAGTtaccatttttgaccactaggtacaataataactctgtggaACTAAATGGGGAAGTGAGCATGCTTCCCTGCGAATGTGCAACATAGAGAAAGGCAATCAAGTCAGTGGAACATCGGCATTTATCTGTCATATAGCAACTTTTTTAAAACCGTTGGTCACTCAAAAAATtttattagtatattagtattTCAGCATAATTTAAAATGCATATGGAGTtctgaatgaggactttataaagattaaaattTGTTGAATTATacaccataacattaaaaccaccgagaggtga

Function

symbol description
wdr78 dynein intermediate chain 4, axonemal

NR:

description
PREDICTED: WD repeat-containing protein 78 isoform X1

GO: NA

KEGG:

id description
K24723 DNAI4, WDR78; dynein intermediate chain 4, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918107.2 True 3935 mRNA 0.44 17 20999483 21011730

Neighbor

gene id symbol gene type direction distance location
ttc22 ttc22 coding upstream 10616 20982532 ~ 20988867 (+)
wwc3 wwc3 coding upstream 50846 20894023 ~ 20948637 (+)
cldn34a cldn34 coding upstream 119016 20876945 ~ 20880467 (+)
shroom2a shroom2 coding upstream 127787 20824340 ~ 20871696 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 315992 20674401 ~ 20683491 (+)
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding downstream 397024 21408754 ~ 21448083 (+)
si:dkey-148h10.5 NA coding downstream 772062 21783792 ~ 21795509 (+)
dock7 dock7 coding downstream 958244 21969974 ~ 22034090 (+)
kank4 kank4 coding downstream 1036786 22048516 ~ 22101105 (+)
LOC117599931 LOC108271599 coding downstream 1098218 22109948 ~ 22119632 (+)
G30747 NA non-coding upstream 35842 20963432 ~ 20963641 (+)
G30715 NA non-coding upstream 109773 20835487 ~ 20889710 (+)
G30721 NA non-coding upstream 147807 20848491 ~ 20851676 (+)
LOC117599214 NA non-coding upstream 217575 20770555 ~ 20781908 (+)
G30620 NA non-coding upstream 318713 20680400 ~ 20680770 (+)
G30791 NA non-coding downstream 81884 21093614 ~ 21093816 (+)
G31260 NA non-coding downstream 373276 21385006 ~ 21385342 (+)
LOC113526220 NA non-coding downstream 390512 21402242 ~ 21406386 (+)
G31384 NA non-coding downstream 597503 21609233 ~ 21612878 (+)
LOC117599889 NA non-coding downstream 624454 21636184 ~ 21642350 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 341403 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 979257 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 1462286 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1912272 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 2050746 18932683 ~ 18948737 (+)
insl5a insl5 other downstream 3108 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 1585865 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 2621876 23633606 ~ 23653555 (+)
G32684 NA other downstream 3008648 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 3641260 24652990 ~ 24656248 (+)

Expression


Co-expression Network