inpp5d (inpp5d)


Basic Information

Item Value
gene id inpp5d
gene name inpp5d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19509832 ~ 19532805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918202.2
agagccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagagagagagagagagaacgagcgCACTCTGACGCAAATAACGCCATGAAACGGGCCTTGGAGGGAAGCTGAATCTGACCTCAAGTTTTGCTGAAGCTAAACCAGTGATCTGAGGAGTAAGTGCTGAGAGAAGGGGTCACTGGACAGAATGTCGTCCCATCAGCCTTGGTACCATGGCAATATCACTCGCTCTATGGCAGAAGACCTGCTCTCCAAAAATGCCAAGGATGGGAGCTTCCTCCTCAGAGACAGCGAGTCCATACAAGGAGCTTATGCCCTCTGCGTGCTGTACCAGAACTGCGTATATACCTATAGAATTCTACCCAATGAAGACAAAAAGCTTTCTGTGCAGGCATCTGAAGGTGTCCCCATTCGCTTCTTCTCTGTGCTCTCAGAGCTGGTGGAAGCGTACTATAAGGAGAACATGGGTTTAGTCACACATCTGCAGTATCCTGTACAGAAGGAGGAGGAGCCAGAGGATGAACCAGAGCAATTCAGTTTACCTCCTCAGCTTCCACCGCGGAACTTCACACCCAGCGAGAGTAGAGATTGCCATGCCGAGCCTGTAAAGACGATAGAGCAAAGCCGCGTGTCCATCTCAGACATTTACGTTCAGCGGCTGCAGCTTGTCGACATGTCACACATCTCTGAAGAACATCAAAAGGCAATCCAGGATTACTTCAGCTCGGCTGTGGCTCTGGATGTGGAGCAGGTACACAATGGGAACCCCACTCTCCCCAACCTGAAGAAGCTTCTCAAGACCATCTGCAAGAGCCTCAACAGTGAGATTTCTCGTACAGTCCCAACTCTGGAGGCCTTACAGAAAATTGTGGATCAGCCCATGTCACCTGGAGCTGGGAGGCTTCGAGGACAGctcTCGCTTGATGCCAGCCAGTCTGTGGCTTTTAGGCTTGAGCAACTGACCAAGCTTTTGTATTCAATTGAAGACAAGGCTAAGAATACAGTATTTGAATCTGCTGGTTATGATGGAGGCCACAGGAAGTCACTTATACCACCTGTAACATTtgaaGTGAAATCAGACTCCCTTGGCATTTCAAGCAAAATGTTCCTAAAGGTTGATGTAGAAAGTGGGAAAGTTTACTTCAAGAAGTCCAAAGATGGACCTGAGGACAAATATTTTGTGCACAATAAAATCCTGCAGTTGGTGAAGTCCCAGAAAATGCACACCAAGCTGGAGATAGTGGTGGAGACCGAGAAAGAGAAGACCCAGCGTAAAGAATTTGTCTTTAATGACACAAAGAAGAGAGAAGGTTTCTGTCAATTACTTCAGcagatgaaaaacaaacattcagATAAGGCTGAGCCAGATATGATCAGCTTATTTGTTGGCACATGGAACATGGGAAATGCCAGCCCACCACAAAACATTACCTCATGGTTTCAGTCCAAGGGGCAAGGGAAGACCCGCGATGACACGGCCAGTCAGATCCCACATGATATCTATGTCATTGGAACACAGGAAGACCCACAGGGAGAGAAGGACTGGATAGATATAGTGAGGGGAACCCTCAGGGACATCACAAACATCAGCTTTAAACAGATAGCTACTCAGACGCTGTGGAATATAAGAATCATTGTTCTGGCCAAGCCAGAACATGAGAATCGCATCTCCCACATCTTCTCGAACAGTGTTAAGACTGGAATAGCTAATGCTCTGGGAAATAAGGGAGCAGTGGGAGTATCGTTTATGTTTAATAACACCTCGTTTGGGTTTGTGAACAGTCACTTGACCTCAGGGAGTGAAAAGAAGATCAGACGGAATCAGAACTATGTCAGCATCCTGCGCTTTCTGAACCTAGGAGATAAGAAACTTAATCTGTTTGACATTACACACCGCTTCACACACCTCTTCTGGCTTGGGGATCTGAACTACCGCATTGACCTTCCACCAGAGGAAGCAGAGAACATTGTGATGAAGATCAAACAGCAGCAGTATCAGGAACTGTTAAGCAGAGACCAGCTCAACATGGAAAGGGCAGATGAAAAGGTTTTTCTGTACTATGaagaagaagacatcACATTTCCCCCAACATATCGTTTTGAGAGAGATACTCATGAAAGATATGTCTACACCAAAGCCAAAGCGACAGGGACTAAATATAACTTGCCTTCATGGTGTGACCGTGTGCTTCGCAAGTCCTACCCACAGGTTCATGTGGCTTGTCACTCATATGGATGCACAAATGACATCATGACAAGCGATCACTCTCCTGTATTTGCTACATTTGATGTTGGAGTGACTTCACAGTTTGTCTCTAAGAACGatccTACAAAGGAGTCTCAGGGTGCAATCAAGTTTATGAACTGTGTTGCCACTCTTAGGACCAAATCCAAGACAAGGTTTTTCATTGAATACCACTCAAGCTGCTTGGAAAAATTTGTCAAGAGTCCTGAGATAGATAATCAAGAGAGCACAGAGGGTTCCATAAAGGTTCGGTTTGCAGCACATGTAGAGCTTACGACCATCATTTCAGACCCAGAATACTTACTAGATCAGCATATACTCATCAGTATAACATCCACAGACAGTGATGAATCATACGGGGAGACATGTGTGGCTTTGCGGGCTGCAGAAACAGCCTACACTGAGTTTGTGGTCCCACTTACACATCATGGTGAGCACACAGGTATGCTAACAGGAGGCATCCAACTACGCACATCAGAAGGGAAACTGACAGAGAAACTATATGATTTCATTAAGATTGGTGATGACTCAGGAACCGGTAAAGTCAAATCAGGAGATCATAAGTCTTTCGCACTACCCACTGATATTAGCAATCCTAATTATATGGATGTTGGCTACAGAAGCAGCAGTCAGTCAGGTTGGAGCTACACAATGGCCAATAGACCAGGAGGCTCCTCTGGACACATGGCTAAAGACACAACTACTGGCAACACCTCGCCAAAAAAGACTGCATATGATCATTCTGTGTGCAGCCCCACAGGAAAGCTGTCCAGTCCAACATCTGAAGATGGGCAACCAGCAGAGATGTTTGATAATCCACTTTATGGATCAATGGGGAAGTCACGATCTGGCAAGGATCAAGAAATGTCCCGAAAAGAGCACTTGGGGGTCCCAGAGGTATTTGCATTTCCAAAAGGCTATGAGTCTGACACTGATCGCATACCTCCAGTCCCAACCCCTCGCGCTCGCTCCTTCACCTGCTCAGAGGGCAAAGGCCAGAATCCTTCCCCGACTcccagcagcaacaacagcatcAGCAGCAGTAACCACAGCAGCAATAGCAGTCTACAGCCTCAGTCCTTCAGCAAGAAGCCTGTGGTGCCCTCTCGCTCTGAAGGAGGAGGGATGATGTCTGGAAAGCCACCACTGCCTGTGAAATCCCGACAAGGTCAAACACCAGAGCCCCTGTCAAAGCCCAGAGACTACAGAGACTCCTCAGAGTTACCAGGCAAGCTGCGGCCTCATGCCAGACCATGCCAGCCACTCCCCAAAGATGTGCATCCTGAGACAGCACCAAGTCCAAAGACAGGTCGCCCTCTGAAATGAGCCTACATTTAGATTCTCCAGCTGGCCATCACTTCTGGAGTTCTACACCAAACTGGAGACTTCACACACCAATTGTGATTAGAGACAAACGCCTAAAGAGGCGTATTAAAAAGCTGGACAAGCTTTTGCCTTATGTGTAGCATTCTtcaagaaagaaatgaaaagctaCAGCAACAGTGCCATGATCTTGCACAAACTCTTTTGTTCCAGCACAAATGAATGTACAGTGCACAAAATTTATCATCATTTAGAGACTATGCATAAAGATCATTCGTCAGATGAAAGTACAAATCGCAACACATTATCATTCATTTCTTATGTGGATGGCTGATGCTTACTGATCTACATTCACAtctgagtttttttgtttgtttgtttgtttgttttaattttcaggCCTTTGCTAGATGGAATGTCTGCGTGAGCCAACATTCAGTTAGATTGACACTGTAATTTCCCTGATGCTGTACTGAGATAATTGGAGAGTAATTTATGAAGCGGAATaagaatatgaataataaacaaatgaatataacgcaatatgaatatgaattttgcCATGTTCACATCATTTTGGAGTTTTGTAATTCATGCAGTTAAGcagtcatttacatttatgggtGTGAAGATAAAAGCATCTGTATCTGATGAGCTGtgatcagccaatcatcagTTACATCTTGTGCATTTACCCCTTGCATTAAAACTCATTTCAAATGTCTCTTCGA
>XM_026918211.2
gagccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagagagagagagagagaacgagcgCACTCTGACGCAAATAACGCCATGAAACGGGCCTTGGAGGGAAGCTGAATCTGACCTCAAGTTTTGCTGAAGCTAAACCAGTGATCTGAGGAGTAAGTGCTGAGAGAAGGGGTCACTGGACAGAATGTCGTCCCATCAGCCTTGGTACCATGGCAATATCACTCGCTCTATGGCAGAAGACCTGCTCTCCAAAAATGCCAAGGATGGGAGCTTCCTCCTCAGAGACAGCGAGTCCATACAAGGAGCTTATGCCCTCTGCGTGCTGTACCAGAACTGCGTATATACCTATAGAATTCTACCCAATGAAGACAAAAAGCTTTCTGTGCAGGCATCTGAAGGTGTCCCCATTCGCTTCTTCTCTGTGCTCTCAGAGCTGGTGGAAGCGTACTATAAGGAGAACATGGGTTTAGTCACACATCTGCAGTATCCTGTACAGAAGGAGGAGGAGCCAGAGGATGAACCAGAGCAATTCAGTTTACCTCCTCAGCTTCCACCGCGGAACTTCACACCCAGCGAGAGTAGAGATTGCCATGCCGAGCCTGTAAAGACGATAGAGCAAAGCCGCGTGTCCATCTCAGACATTTACGTTCAGCGGCTGCAGCTTGTCGACATGTCACACATCTCTGAAGAACATCAAAAGGCAATCCAGGATTACTTCAGCTCGGCTGTGGCTCTGGATGTGGAGCAGGTACACAATGGGAACCCCACTCTCCCCAACCTGAAGAAGCTTCTCAAGACCATCTGCAAGAGCCTCAACAGTGAGATTTCTCGTACAGTCCCAACTCTGGAGGCCTTACAGAAAATTGTGGATCAGCCCATGTCACCTGGAGCTGGGAGGCTTCGAGGACAGctcTCGCTTGATGCCAGCCAGTCTGTGGCTTTTAGGCTTGAGCAACTGACCAAGCTTTTGTATTCAATTGAAGACAAGGCTAAGAATACAGTATTTGAATCTGCTGGTTATGATGGAGGCCACAGGAAGTCACTTATACCACCTGTAACATTtgaaGTGAAATCAGACTCCCTTGGCATTTCAAGCAAAATGTTCCTAAAGGTTGATGTAGAAAGTGGGAAAGTTTACTTCAAGAAGTCCAAAGATGGACCTGAGGACAAATATTTTGTGCACAATAAAATCCTGCAGTTGGTGAAGTCCCAGAAAATGCACACCAAGCTGGAGATAGTGGTGGAGACCGAGAAAGAGAAGACCCAGCGTAAAGAATTTGTCTTTAATGACACAAAGAAGAGAGAAGGTTTCTGTCAATTACTTCAGcagatgaaaaacaaacattcagATAAGGCTGAGCCAGATATGATCAGCTTATTTGTTGGCACATGGAACATGGGAAATGCCAGCCCACCACAAAACATTACCTCATGGTTTCAGTCCAAGGGGCAAGGGAAGACCCGCGATGACACGGCCAGTCAGATCCCACATGATATCTATGTCATTGGAACACAGGAAGACCCACAGGGAGAGAAGGACTGGATAGATATAGTGAGGGGAACCCTCAGGGACATCACAAACATCAGCTTTAAACAGATAGCTACTCAGACGCTGTGGAATATAAGAATCATTGTTCTGGCCAAGCCAGAACATGAGAATCGCATCTCCCACATCTTCTCGAACAGTGTTAAGACTGGAATAGCTAATGCTCTGGGAAATAAGGGAGCAGTGGGAGTATCGTTTATGTTTAATAACACCTCGTTTGGGTTTGTGAACAGTCACTTGACCTCAGGGAGTGAAAAGAAGATCAGACGGAATCAGAACTATGTCAGCATCCTGCGCTTTCTGAACCTAGGAGATAAGAAACTTAATCTGTTTGACATTACACACCGCTTCACACACCTCTTCTGGCTTGGGGATCTGAACTACCGCATTGACCTTCCACCAGAGGAAGCAGAGAACATTGTGATGAAGATCAAACAGCAGCAGTATCAGGAACTGTTAAGCAGAGACCAGCTCAACATGGAAAGGGCAGATGAAAAGGTTTTTCTGTACTATGaagaagaagacatcACATTTCCCCCAACATATCGTTTTGAGAGAGATACTCATGAAAGATATGTCTACACCAAAGCCAAAGCGACAGGGACTAAATATAACTTGCCTTCATGGTGTGACCGTGTGCTTCGCAAGTCCTACCCACAGGTTCATGTGGCTTGTCACTCATATGGATGCACAAATGACATCATGACAAGCGATCACTCTCCTGTATTTGCTACATTTGATGTTGGAGTGACTTCACAGTTTGTCTCTAAGAACGatccTACAAAGGAGTCTCAGGGTGCAATCAAGTTTATGAACTGTGTTGCCACTCTTAGGACCAAATCCAAGACAAGGTTTTTCATTGAATACCACTCAAGCTGCTTGGAAAAATTTGTCAAGAGTCCTGAGATAGATAATCAAGAGAGCACAGAGGGTTCCATAAAGGTTCGGTTTGCAGCACATGTAGAGCTTACGACCATCATTTCAGACCCAGAATACTTACTAGATCAGCATATACTCATCAGTATAACATCCACAGACAGTGATGAATCATACGGGGAGACATGTGTGGCTTTGCGGGCTGCAGAAACAGCCTACACTGAGTTTGTGGTCCCACTTACACATCATGGTGAGCACACAGGTATGCTAACAGGAGGCATCCAACTACGCACATCAGAAGGGAAACTGACAGAGAAACTATATGATTTCATTAAGATTGGTGATGACTCAGGAACCGGTAAAGTCAAATCAGGAGATCATAAAAGCAGCAGTCAGTCAGGTTGGAGCTACACAATGGCCAATAGACCAGGAGGCTCCTCTGGACACATGGCTAAAGACACAACTACTGGCAACACCTCGCCAAAAAAGACTGCATATGATCATTCTGTGTGCAGCCCCACAGGAAAGCTGTCCAGTCCAACATCTGAAGATGGGCAACCAGCAGAGATGTTTGATAATCCACTTTATGGATCAATGGGGAAGTCACGATCTGGCAAGGATCAAGAAATGTCCCGAAAAGAGCACTTGGGGGTCCCAGAGGTATTTGCATTTCCAAAAGGCTATGAGTCTGACACTGATCGCATACCTCCAGTCCCAACCCCTCGCGCTCGCTCCTTCACCTGCTCAGAGGGCAAAGGCCAGAATCCTTCCCCGACTcccagcagcaacaacagcatcAGCAGCAGTAACCACAGCAGCAATAGCAGTCTACAGCCTCAGTCCTTCAGCAAGAAGCCTGTGGTGCCCTCTCGCTCTGAAGGAGGAGGGATGATGTCTGGAAAGCCACCACTGCCTGTGAAATCCCGACAAGGTCAAACACCAGAGCCCCTGTCAAAGCCCAGAGACTACAGAGACTCCTCAGAGTTACCAGGCAAGCTGCGGCCTCATGCCAGACCATGCCAGCCACTCCCCAAAGATGTGCATCCTGAGACAGCACCAAGTCCAAAGACAGGTCGCCCTCTGAAATGAGCCTACATTTAGATTCTCCAGCTGGCCATCACTTCTGGAGTTCTACACCAAACTGGAGACTTCACACACCAATTGTGATTAGAGACAAACGCCTAAAGAGGCGTATTAAAAAGCTGGACAAGCTTTTGCCTTATGTGTAGCATTCTtcaagaaagaaatgaaaagctaCAGCAACAGTGCCATGATCTTGCACAAACTCTTTTGTTCCAGCACAAATGAATGTACAGTGCACAAAATTTATCATCATTTAGAGACTATGCATAAAGATCATTCGTCAGATGAAAGTACAAATCGCAACACATTATCATTCATTTCTTATGTGGATGGCTGATGCTTACTGATCTACATTCACAtctgagtttttttgtttgtttgtttgtttgttttaattttcaggCCTTTGCTAGATGGAATGTCTGCGTGAGCCAACATTCAGTTAGATTGACACTGTAATTTCCCTGATGCTGTACTGAGATAATTGGAGAGTAATTTATGAAGCGGAATaagaatatgaataataaacaaatgaatataacgcaatatgaatatgaattttgcCATGTTCACATCATTTTGGAGTTTTGTAATTCATGCAGTTAAGcagtcatttacatttatgggtGTGAAGATAAAAGCATCTGTATCTGATGAGCTGtgatcagccaatcatcagTTACATCTTGTGCATTTACCCCTTGCATTAAAACTCATTTCAAATGTCTCTTCGA

Function

symbol description
inpp5d Predicted to enable hydrolase activity. Acts upstream of or within negative regulation of neutrophil chemotaxis. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Orthologous to human INPP5D (inositol polyphosphate-5-phosphatase D).

NR:

description
phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1-like

GO: NA

KEGG:

id description
K03084 SHIP1, INPP5D; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918202.2 True 4299 mRNA 0.45 27 19509832 19532805
XM_026918211.2 False 4241 mRNA 0.45 27 19509833 19532805

Neighbor

gene id symbol gene type direction distance location
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682 coding upstream 2975 19501596 ~ 19506857 (+)
LOC113527823 LOC108271983,LOC108427680,LOC108271985 coding upstream 9225 19477978 ~ 19500607 (+)
LOC117595738 LOC108271985,LOC108271983,LOC108427680 coding upstream 35099 19465393 ~ 19474733 (+)
sap130a sap130a,LOC108271984,LOC107696772,LOC107590658,LOC107552246,LOC108427679 coding upstream 46515 19448315 ~ 19463317 (+)
amotl2a amotl2 coding upstream 73179 19427503 ~ 19436653 (+)
lpp lpp,LOC108271779,LOC108427685,LOC107717931,LOC107590653,LOC107684332,LOC107696776,LOC107752632 coding downstream 56022 19588827 ~ 19803848 (+)
tprg1 LOC108272012 coding downstream 322325 19855130 ~ 19883588 (+)
tp63 tp63,LOC107574491,LOC103365775 coding downstream 351956 19884761 ~ 19956034 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding downstream 571399 20104204 ~ 20112519 (+)
LOC113537321 NA coding downstream 577325 20110130 ~ 20110225 (+)
G29819 NA non-coding upstream 92924 19415605 ~ 19416908 (+)
G29792 NA non-coding upstream 250566 19259048 ~ 19259266 (+)
G29674 NA non-coding upstream 307733 19200315 ~ 19202099 (+)
G29656 NA non-coding upstream 314423 19192549 ~ 19195409 (+)
G29641 NA non-coding upstream 458789 19050824 ~ 19051043 (+)
LOC113533855 NA non-coding downstream 5180 19537985 ~ 19540117 (+)
G29984 NA non-coding downstream 7824 19540629 ~ 19540910 (+)
G29985 NA non-coding downstream 8134 19540939 ~ 19541248 (+)
LOC117596099 NA non-coding downstream 20247 19553052 ~ 19582043 (+)
G29999 NA non-coding downstream 33005 19565810 ~ 19566023 (+)
LOC113533886 espnl other upstream 422621 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 561095 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 674111 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 692357 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 3108721 16398245 ~ 16401111 (+)
smx5 lsm2,LSM2,smx5 other downstream 1540 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 467241 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1004168 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1482033 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 3064790 22597595 ~ 22603436 (+)

Expression


Co-expression Network